Literature DB >> 24108606

Consistency of influenza A virus detection test results across respiratory specimen collection methods using real-time reverse transcription-PCR.

Sarah Spencer1, Manjusha Gaglani, Allison Naleway, Sue Reynolds, Sarah Ball, Sam Bozeman, Emily Henkle, Jennifer Meece, Mary Vandermause, Lydia Clipper, Mark Thompson.   

Abstract

In our prospective cohort study, we compared the performance of nasopharyngeal, oropharyngeal, and nasal swabs for the detection of influenza virus using real-time reverse transcription-PCR assay. Joint consideration of results from oropharyngeal and nasal swabs was as effective as consideration of results from nasopharyngeal swabs alone, as measured by sensitivity and noninferiority analysis.

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Year:  2013        PMID： 24108606      PMCID： PMC3889789          DOI： 10.1128/JCM.01873-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  11 in total

1.  The expected emotional benefits of influenza vaccination strongly affect pre-season intentions and subsequent vaccination among healthcare personnel.

Authors:  Mark G Thompson; Manjusha J Gaglani; Allison Naleway; Sarah Ball; Emily M Henkle; Leslie Z Sokolow; Beth Brennan; Hong Zhou; Lydia Foster; Carla Black; Erin D Kennedy; Sam Bozeman; Lisa A Grohskopf; David K Shay
Journal:  Vaccine       Date:  2012-04-01       Impact factor: 3.641

2.  Comparison between pernasal flocked swabs and nasopharyngeal aspirates for detection of common respiratory viruses in samples from children.

Authors:  Afaf Abu-Diab; Maysa Azzeh; Raed Ghneim; Riyad Ghneim; Madeleine Zoughbi; Sultan Turkuman; Nabeel Rishmawi; Abed-El-Razeq Issa; Issa Siriani; Rula Dauodi; Randa Kattan; Musa Y Hindiyeh
Journal:  J Clin Microbiol       Date:  2008-05-14       Impact factor: 5.948

3.  Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection.

Authors:  Laura L Hammitt; Sidi Kazungu; Steve Welch; Anne Bett; Clayton O Onyango; Rory N Gunson; J Anthony G Scott; D James Nokes
Journal:  J Clin Microbiol       Date:  2011-04-13       Impact factor: 5.948

4.  An application of hierarchical kappa-type statistics in the assessment of majority agreement among multiple observers.

Authors:  J R Landis; G G Koch
Journal:  Biometrics       Date:  1977-06       Impact factor: 2.571

5.  Symptomatic predictors of influenza virus positivity in children during the influenza season.

Authors:  Suzanne E Ohmit; Arnold S Monto
Journal:  Clin Infect Dis       Date:  2006-07-12       Impact factor: 9.079

6.  Evaluation of rapid influenza diagnostic tests for detection of novel influenza A (H1N1) Virus - United States, 2009.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2009-08-07       Impact factor: 17.586

7.  Seasonal influenza in adults and children--diagnosis, treatment, chemoprophylaxis, and institutional outbreak management: clinical practice guidelines of the Infectious Diseases Society of America.

Authors:  Scott A Harper; John S Bradley; Janet A Englund; Thomas M File; Stefan Gravenstein; Frederick G Hayden; Allison J McGeer; Kathleen M Neuzil; Andrew T Pavia; Michael L Tapper; Timothy M Uyeki; Richard K Zimmerman
Journal:  Clin Infect Dis       Date:  2009-04-15       Impact factor: 9.079

8.  Effectiveness of inactivated influenza vaccines varied substantially with antigenic match from the 2004-2005 season to the 2006-2007 season.

Authors:  Edward A Belongia; Burney A Kieke; James G Donahue; Robert T Greenlee; Amanda Balish; Angie Foust; Stephen Lindstrom; David K Shay
Journal:  J Infect Dis       Date:  2009-01-15       Impact factor: 5.226

9.  Identification of respiratory viruses in adults: nasopharyngeal versus oropharyngeal sampling.

Authors:  David Lieberman; Devora Lieberman; Avi Shimoni; Ayelet Keren-Naus; Rachel Steinberg; Yonat Shemer-Avni
Journal:  J Clin Microbiol       Date:  2009-09-02       Impact factor: 5.948

10.  Comparison of nasopharyngeal and oropharyngeal swabs for the diagnosis of eight respiratory viruses by real-time reverse transcription-PCR assays.

Authors:  Curi Kim; Jamal A Ahmed; Rachel B Eidex; Raymond Nyoka; Lilian W Waiboci; Dean Erdman; Adan Tepo; Abdirahman S Mahamud; Wamburu Kabura; Margaret Nguhi; Philip Muthoka; Wagacha Burton; Robert F Breiman; M Kariuki Njenga; Mark A Katz
Journal:  PLoS One       Date:  2011-06-30       Impact factor: 3.240
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  12 in total

1.  Practical Guidance for Clinical Microbiology Laboratories: Viruses Causing Acute Respiratory Tract Infections.

Authors:  Carmen L Charlton; Esther Babady; Christine C Ginocchio; Todd F Hatchette; Robert C Jerris; Yan Li; Mike Loeffelholz; Yvette S McCarter; Melissa B Miller; Susan Novak-Weekley; Audrey N Schuetz; Yi-Wei Tang; Ray Widen; Steven J Drews
Journal:  Clin Microbiol Rev       Date:  2018-12-12       Impact factor: 26.132

2.  Comparison of Respiratory Specimen Collection Methods for Detection of Influenza Virus Infection by Reverse Transcription-PCR: a Literature Review.

Authors:  Sarah Spencer; Mark G Thompson; Brendan Flannery; Alicia Fry
Journal:  J Clin Microbiol       Date:  2019-08-26       Impact factor: 5.948

3.  Detection and Stability of SARS-CoV-2 in Three Self-Collected Specimen Types: Flocked Midturbinate Swab (MTS) in Viral Transport Media, Foam MTS, and Saliva.

Authors:  Vic Veguilla; Ashley L Fowlkes; Adam Bissonnette; Shawn Beitel; Manjusha Gaglani; Christina A Porucznik; Melissa S Stockwell; Harmony L Tyner; Allison L Naleway; Sarang K Yoon; Alberto J Caban-Martinez; Meredith G Wesley; Jazmin Duque; Zuha Jeddy; Joseph B Stanford; Michael Daugherty; Ashton Dixon; Jefferey L Burgess; Marilyn Odean; Holly C Groom; Andrew L Phillips; Natasha Schaefer-Solle; Peenaz Mistry; Melissa A Rolfes; Mark Thompson; Fatimah S Dawood; Jennifer Meece
Journal:  Microbiol Spectr       Date:  2022-06-06

4.  Underdetection of laboratory-confirmed influenza-associated hospital admissions among infants: a multicentre, prospective study.

Authors:  Mark G Thompson; Min Z Levine; Silvia Bino; Danielle R Hunt; Tareq M Al-Sanouri; Eric A F Simões; Rachael M Porter; Holly M Biggs; Lionel Gresh; Artan Simaku; Illham Abu Khader; Veronica L Tallo; Jennifer K Meece; Meredith McMorrow; Edelwisa S Mercado; Sneha Joshi; Nicholas P DeGroote; Iris Hatibi; Felix Sanchez; Marilla G Lucero; Samir Faouri; Stacie N Jefferson; Numila Maliqari; Angel Balmaseda; Diozele Sanvictores; Crystal Holiday; Cristina Sciuto; Zachary Owens; Eduardo Azziz-Baumgartner; Aubree Gordon
Journal:  Lancet Child Adolesc Health       Date:  2019-09-03

5.  Results of a pilot study using self-collected mid-turbinate nasal swabs for detection of influenza virus infection among pregnant women.

Authors:  Mark G Thompson; Jeannette R Ferber; Roxana Odouli; Donna David; Pat Shifflett; Jennifer K Meece; Allison L Naleway; Sam Bozeman; Sarah M Spencer; Alicia M Fry; De-Kun Li
Journal:  Influenza Other Respir Viruses       Date:  2015-05       Impact factor: 4.380

6.  Comparison of detection rate of 16 sampling methods for respiratory viruses: a Bayesian network meta-analysis of clinical data and systematic review.

Authors:  Nianzong Hou; Kai Wang; Haiyang Zhang; Mingjian Bai; Hao Chen; Weidong Song; Fusen Jia; Yi Zhang; Shiliang Han; Bing Xie
Journal:  BMJ Glob Health       Date:  2020-11

7.  Influenza-associated outpatient visits among children less than 5 years of age in eastern China, 2011-2014.

Authors:  Tao Zhang; Jun Zhang; Jun Hua; Dan Wang; Liling Chen; Yunfang Ding; Shanshan Zeng; Jing Wu; Yanwei Jiang; Qian Geng; Suizan Zhou; Ying Song; A Danielle Iuliano; Carolyn M Greene; Jeffrey McFarland; Genming Zhao
Journal:  BMC Infect Dis       Date:  2016-06-10       Impact factor: 3.090

8.  Classification and Regression Tree (CART) analysis to predict influenza in primary care patients.

Authors:  Richard K Zimmerman; G K Balasubramani; Mary Patricia Nowalk; Heather Eng; Leonard Urbanski; Michael L Jackson; Lisa A Jackson; Huong Q McLean; Edward A Belongia; Arnold S Monto; Ryan E Malosh; Manjusha Gaglani; Lydia Clipper; Brendan Flannery; Stephen R Wisniewski
Journal:  BMC Infect Dis       Date:  2016-09-22       Impact factor: 3.667

Review 9.  Considerations for diagnostic COVID-19 tests.

Authors:  Olivier Vandenberg; Delphine Martiny; Olivier Rochas; Alex van Belkum; Zisis Kozlakidis
Journal:  Nat Rev Microbiol       Date:  2020-10-14       Impact factor: 78.297

10.  Home collection of nasal swabs for detection of influenza in the Household Influenza Vaccine Evaluation Study.

Authors:  Ryan E Malosh; Joshua G Petrie; Amy P Callear; Arnold S Monto; Emily T Martin
Journal:  Influenza Other Respir Viruses       Date:  2020-10-26       Impact factor: 5.606
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