Literature DB >> 24089722

Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors.

Alexander M Berezhkovskii1, Attila Szabo.   

Abstract

The role of diffusion in the kinetics of reversible ligand binding to receptors on a cell surface or to a macromolecule with multiple binding sites is considered. A formalism is developed that is based on a Markovian master equation for the distribution function of the number of occupied receptors containing rate constants that depend on the ligand diffusivity. The formalism is used to derive (1) a nonlinear rate equation for the mean number of occupied receptors and (2) an analytical expression for the relaxation time that characterizes the decay of equilibrium fluctuations of the occupancy of the receptors. The relaxation time is shown to depend on the ligand diffusivity and concentration, the number of receptors, the cell radius, and intrinsic association/dissociation rate constants. This result is then used to estimate the accuracy of the ligand concentration measurements by the cell, which, according to the Berg-Purcell model, is related to fluctuations in the receptor occupancy, averaged over a finite interval of time. Specifically, a simple expression (which is exact in the framework of our formalism) is derived for the variance in the measured ligand concentration in the limit of long averaging times.

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Year:  2013        PMID: 24089722      PMCID: PMC3739832          DOI: 10.1063/1.4816105

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Long-time tails in the kinetics of reversible bimolecular reactions.

Authors:  I V Gopich; A A Ovchinnikov; A Szabo
Journal:  Phys Rev Lett       Date:  2001-01-29       Impact factor: 9.161

2.  Boundary homogenization for trapping by patchy surfaces.

Authors:  Alexander M Berezhkovskii; Yurii A Makhnovskii; Michael I Monine; Vladimir Yu Zitserman; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2004-12-08       Impact factor: 3.488

3.  Homogenization of boundary conditions on surfaces randomly covered by patches of different sizes and shapes.

Authors:  Yurii A Makhnovskii; Alexander M Berezhkovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2005-06-15       Impact factor: 3.488

4.  Physical limits to biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

5.  Homogenization of boundary conditions for surfaces with regular arrays of traps.

Authors:  Alexander M Berezhkovskii; Michael I Monine; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2006-01-21       Impact factor: 3.488

6.  Quantifying noise levels of intercellular signals.

Authors:  Kai Wang; Wouter-Jan Rappel; Rex Kerr; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-06-05

7.  Time dependent rate of diffusion-influenced ligand binding to receptors on cell surfaces.

Authors:  R Zwanzig; A Szabo
Journal:  Biophys J       Date:  1991-09       Impact factor: 4.033

8.  Physics of chemoreception.

Authors:  H C Berg; E M Purcell
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

9.  Approximating the effects of diffusion on reversible reactions at the cell surface: ligand-receptor kinetics.

Authors:  B Goldstein; M Dembo
Journal:  Biophys J       Date:  1995-04       Impact factor: 4.033

10.  Role of diffusion in ligand binding to macromolecules and cell-bound receptors.

Authors:  D Shoup; A Szabo
Journal:  Biophys J       Date:  1982-10       Impact factor: 4.033

  10 in total
  20 in total

1.  Note: Boundary homogenization for a circle with periodic absorbing arcs. Exact expression for the effective trapping rate.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2015-12-14       Impact factor: 3.488

2.  Perspective: Reaches of chemical physics in biology.

Authors:  Martin Gruebele; D Thirumalai
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

3.  Trapping of diffusing particles by striped cylindrical surfaces. Boundary homogenization approach.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Alexei T Skvortsov
Journal:  J Chem Phys       Date:  2015-06-21       Impact factor: 3.488

4.  Juxtacrine signaling is inherently noisy.

Authors:  Tomer Yaron; Yossi Cordova; David Sprinzak
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

5.  Diffusion-induced competitive two-site binding.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Chem Phys       Date:  2019-03-07       Impact factor: 3.488

6.  Steady-state flux of diffusing particles to a rough boundary formed by absorbing spikes periodically protruding from a reflecting base.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2019-05-21       Impact factor: 3.488

7.  Boundary homogenization for a sphere with an absorbing cap of arbitrary size.

Authors:  Leonardo Dagdug; Marco-Vinicio Vázquez; Alexander M Berezhkovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2016-12-07       Impact factor: 3.488

8.  Trapping of diffusing particles by short absorbing spikes periodically protruding from reflecting base.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2018-07-28       Impact factor: 3.488

9.  The Berg-Purcell limit revisited.

Authors:  Kazunari Kaizu; Wiet de Ronde; Joris Paijmans; Koichi Takahashi; Filipe Tostevin; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

10.  Extending the dynamic range of transcription factor action by translational regulation.

Authors:  Thomas R Sokolowski; Aleksandra M Walczak; William Bialek; Gašper Tkačik
Journal:  Phys Rev E       Date:  2016-02-04       Impact factor: 2.529

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