Literature DB >> 28799376

Boundary homogenization for a sphere with an absorbing cap of arbitrary size.

Leonardo Dagdug1, Marco-Vinicio Vázquez1, Alexander M Berezhkovskii2, Vladimir Yu Zitserman3.   

Abstract

This paper focuses on trapping of diffusing particles by a sphere with an absorbing cap of arbitrary size on the otherwise reflecting surface. We approach the problem using boundary homogenization which is an approximate replacement of non-uniform boundary conditions on the surface of the sphere by an effective uniform boundary condition with appropriately chosen effective trapping rate. One of the main results of our analysis is an expression for the effective trapping rate as a function of the surface fraction occupied by the absorbing cap. As the cap surface fraction increases from zero to unity, the effective trapping rate increases from that for a small absorbing disk on the otherwise reflecting sphere to infinity which corresponds to a perfectly absorbing sphere. The obtained expression for the effective trapping rate is applied to find the rate constant describing trapping of diffusing particles by an absorbing cap on the surface of the sphere. Finally, we find the capacitance of a metal cap of arbitrary size on a dielectric sphere using the relation between the capacitance and the rate constant of the corresponding diffusion-limited reaction. The relative error of our approximate expressions for the rate constant and the capacitance is less than 5% over the entire range of the cap surface fraction from zero to unity.

Year:  2016        PMID: 28799376      PMCID: PMC5135721          DOI: 10.1063/1.4968598

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  22 in total

1.  Stochastic model of autocrine and paracrine signals in cell culture assays.

Authors:  Lazaros Batsilas; Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Effect of rotation on the diffusion-controlled rate of ligand-protein association.

Authors:  T L Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

3.  Boundary homogenization for trapping by patchy surfaces.

Authors:  Alexander M Berezhkovskii; Yurii A Makhnovskii; Michael I Monine; Vladimir Yu Zitserman; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2004-12-08       Impact factor: 3.488

4.  Ligand accumulation in autocrine cell cultures.

Authors:  Michael I Monine; Alexander M Berezhkovskii; Elizabeth J Joslin; H Steven Wiley; Douglas A Lauffenburger; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

5.  Homogenization of boundary conditions for surfaces with regular arrays of traps.

Authors:  Alexander M Berezhkovskii; Michael I Monine; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2006-01-21       Impact factor: 3.488

6.  Time dependent rate of diffusion-influenced ligand binding to receptors on cell surfaces.

Authors:  R Zwanzig; A Szabo
Journal:  Biophys J       Date:  1991-09       Impact factor: 4.033

7.  Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors.

Authors:  Alexander M Berezhkovskii; Attila Szabo
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

8.  Diffusion-controlled ligand binding to spheres partially covered by receptors: an effective medium treatment.

Authors:  R Zwanzig
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

9.  Trapping of diffusing particles by striped cylindrical surfaces. Boundary homogenization approach.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Alexei T Skvortsov
Journal:  J Chem Phys       Date:  2015-06-21       Impact factor: 3.488

10.  A structure-permeability relationship of ultrathin nanoporous silicon membrane: a comparison with the nuclear envelope.

Authors:  Eunkyoung Kim; Hui Xiong; Christopher C Striemer; David Z Fang; Philippe M Fauchet; James L McGrath; Shigeru Amemiya
Journal:  J Am Chem Soc       Date:  2008-03-07       Impact factor: 15.419

View more
  9 in total

1.  Theory of Diffusion-Influenced Reaction Networks.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Phys Chem B       Date:  2018-10-04       Impact factor: 2.991

2.  Diffusion-induced competitive two-site binding.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Chem Phys       Date:  2019-03-07       Impact factor: 3.488

3.  Steady-state flux of diffusing particles to a rough boundary formed by absorbing spikes periodically protruding from a reflecting base.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2019-05-21       Impact factor: 3.488

4.  Trapping of diffusing particles by short absorbing spikes periodically protruding from reflecting base.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2018-07-28       Impact factor: 3.488

5.  Note: Effect of a small surface defect on the Smoluchowski rate constant and capacitance of a spherical capacitor.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2017-09-14       Impact factor: 3.488

6.  Surface-facilitated trapping by active sites: From catalysts to viruses.

Authors:  Mikita M Misiura; Alexander M Berezhkovskii; Sergey M Bezrukov; Anatoly B Kolomeisky
Journal:  J Chem Phys       Date:  2021-11-14       Impact factor: 3.488

7.  Evaluating diffusion resistance of a constriction in a membrane channel by the method of boundary homogenization.

Authors:  Alexei T Skvortsov; Leonardo Dagdug; Alexander M Berezhkovskii; Ian R MacGillivray; Sergey M Bezrukov
Journal:  Phys Rev E       Date:  2021-01       Impact factor: 2.529

8.  Revising Berg-Purcell for finite receptor kinetics.

Authors:  Gregory Handy; Sean D Lawley
Journal:  Biophys J       Date:  2021-03-29       Impact factor: 3.699

9.  Effects of the Size, the Number, and the Spatial Arrangement of Reactive Patches on a Sphere on Diffusion-limited Reaction Kinetics: A Comprehensive Study.

Authors:  Changsun Eun
Journal:  Int J Mol Sci       Date:  2020-02-03       Impact factor: 5.923

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.