Literature DB >> 7139033

Role of diffusion in ligand binding to macromolecules and cell-bound receptors.

D Shoup, A Szabo.   

Abstract

The association and dissociation rates of partially diffusion-controlled bimolecular reactions are considered. A simple expression for the equilibrium constant is derived using classical statistical mechanics. The relationship is established between the Collins-Kimball treatment, which is based on the "radiation" boundary condition involving an intrinsic rate constant k, and the kinetic scheme A + B in equilibrium A . . . B in equilibrium AB where A . . . B is an encounter complex. It is shown that with the appropriate choice of the interaction potential, Debye's expression for the association rate constant becomes identical to that obtained using the radiation boundary condition if k is evaluated using Kramers' theory of diffusive barrier crossing. Finally, the competitive binding of ligand to a spherical cell, whose surface is partially covered by multiple reactive sites, is studied by treating the cell as a partially reacting sphere.

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Year:  1982        PMID: 7139033      PMCID: PMC1328970          DOI: 10.1016/S0006-3495(82)84455-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  6 in total

1.  Effect of rotation on the diffusion-controlled rate of ligand-protein association.

Authors:  T L Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

2.  Physics of chemoreception.

Authors:  H C Berg; E M Purcell
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

3.  The role of diffusion in bimolecular solution kinetics.

Authors:  J M Schurr
Journal:  Biophys J       Date:  1970-08       Impact factor: 4.033

Review 4.  The biophysics of ligand-receptor interactions.

Authors:  C DeLisi
Journal:  Q Rev Biophys       Date:  1980-05       Impact factor: 5.318

5.  Effect of nonspecific forces and finite receptor number on rate constants of ligand--cell bound-receptor interactions.

Authors:  C DeLisi; F W Wiegel
Journal:  Proc Natl Acad Sci U S A       Date:  1981-09       Impact factor: 11.205

6.  Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints.

Authors:  D Shoup; G Lipari; A Szabo
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

  6 in total
  116 in total

1.  Dissociation of HIV-1 from follicular dendritic cells during HAART: mathematical analysis.

Authors:  W S Hlavacek; C Wofsy; A S Perelson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  Spatial range of autocrine signaling: modeling and computational analysis.

Authors:  S Y Shvartsman; H S Wiley; W M Deen; D A Lauffenburger
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Steric effects on multivalent ligand-receptor binding: exclusion of ligand sites by bound cell surface receptors.

Authors:  W S Hlavacek; R G Posner; A S Perelson
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

4.  Autocrine ligand binding to cell receptors. Mathematical analysis of competition by solution "decoys".

Authors:  K E Forsten; D A Lauffenburger
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

5.  On the theory of noncovalent binding.

Authors:  Mihail Mihailescu; Michael K Gilson
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

6.  L-selectin-mediated leukocyte tethering in shear flow is controlled by multiple contacts and cytoskeletal anchorage facilitating fast rebinding events.

Authors:  Ulrich S Schwarz; Ronen Alon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

7.  Communication: Clusters of absorbing disks on a reflecting wall: competition for diffusing particles.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Vladimir A Lizunov; Joshua Zimmerberg; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2012-06-07       Impact factor: 3.488

8.  Charge effects on the fibril-forming peptide KTVIIE: a two-dimensional replica exchange simulation study.

Authors:  Joohyun Jeon; M Scott Shell
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

9.  The diabetogenic mouse MHC class II molecule I-Ag7 is endowed with a switch that modulates TCR affinity.

Authors:  Kenji Yoshida; Adam L Corper; Rana Herro; Bana Jabri; Ian A Wilson; Luc Teyton
Journal:  J Clin Invest       Date:  2010-04-19       Impact factor: 14.808

Review 10.  Long-lasting target binding and rebinding as mechanisms to prolong in vivo drug action.

Authors:  Georges Vauquelin; Steven J Charlton
Journal:  Br J Pharmacol       Date:  2010-10       Impact factor: 8.739

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