Literature DB >> 26093574

Trapping of diffusing particles by striped cylindrical surfaces. Boundary homogenization approach.

Leonardo Dagdug1, Alexander M Berezhkovskii2, Alexei T Skvortsov3.   

Abstract

We study trapping of diffusing particles by a cylindrical surface formed by rolling a flat surface, containing alternating absorbing and reflecting stripes, into a tube. For an arbitrary stripe orientation with respect to the tube axis, this problem is intractable analytically because it requires dealing with non-uniform boundary conditions. To bypass this difficulty, we use a boundary homogenization approach which replaces non-uniform boundary conditions on the tube wall by an effective uniform partially absorbing boundary condition with properly chosen effective trapping rate. We demonstrate that the exact solution for the effective trapping rate, known for a flat, striped surface, works very well when this surface is rolled into a cylindrical tube. This is shown for both internal and external problems, where the particles diffuse inside and outside the striped tube, at three orientations of the stripe direction with respect to the tube axis: (a) perpendicular to the axis, (b) parallel to the axis, and (c) at the angle of π/4 to the axis.

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Year:  2015        PMID: 26093574      PMCID: PMC4474949          DOI: 10.1063/1.4922444

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  15 in total

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2.  Boundary homogenization for trapping by patchy surfaces.

Authors:  Alexander M Berezhkovskii; Yurii A Makhnovskii; Michael I Monine; Vladimir Yu Zitserman; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2004-12-08       Impact factor: 3.488

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4.  Physical limits to biochemical signaling.

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5.  Homogenization of boundary conditions for surfaces with regular arrays of traps.

Authors:  Alexander M Berezhkovskii; Michael I Monine; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2006-01-21       Impact factor: 3.488

6.  Boundary homogenization for spherical surfaces randomly covered with nonoverlapping partially absorbing disks.

Authors:  Gianluca Marcelli
Journal:  J Chem Phys       Date:  2007-11-07       Impact factor: 3.488

7.  Time dependent rate of diffusion-influenced ligand binding to receptors on cell surfaces.

Authors:  R Zwanzig; A Szabo
Journal:  Biophys J       Date:  1991-09       Impact factor: 4.033

8.  Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors.

Authors:  Alexander M Berezhkovskii; Attila Szabo
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

9.  Diffusion-controlled ligand binding to spheres partially covered by receptors: an effective medium treatment.

Authors:  R Zwanzig
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

10.  A structure-permeability relationship of ultrathin nanoporous silicon membrane: a comparison with the nuclear envelope.

Authors:  Eunkyoung Kim; Hui Xiong; Christopher C Striemer; David Z Fang; Philippe M Fauchet; James L McGrath; Shigeru Amemiya
Journal:  J Am Chem Soc       Date:  2008-03-07       Impact factor: 15.419

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  6 in total

1.  Note: Boundary homogenization for a circle with periodic absorbing arcs. Exact expression for the effective trapping rate.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2015-12-14       Impact factor: 3.488

2.  Steady-state flux of diffusing particles to a rough boundary formed by absorbing spikes periodically protruding from a reflecting base.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2019-05-21       Impact factor: 3.488

3.  Trapping of diffusing particles by periodic absorbing rings on a cylindrical tube.

Authors:  Denis S Grebenkov; Ralf Metzler; Gleb Oshanin; Leonardo Dagdug; Alexander M Berezhkovskii; Alexei T Skvortsov
Journal:  J Chem Phys       Date:  2019-05-28       Impact factor: 3.488

4.  Boundary homogenization for a sphere with an absorbing cap of arbitrary size.

Authors:  Leonardo Dagdug; Marco-Vinicio Vázquez; Alexander M Berezhkovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2016-12-07       Impact factor: 3.488

5.  Trapping of diffusing particles by short absorbing spikes periodically protruding from reflecting base.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2018-07-28       Impact factor: 3.488

6.  Evaluating diffusion resistance of a constriction in a membrane channel by the method of boundary homogenization.

Authors:  Alexei T Skvortsov; Leonardo Dagdug; Alexander M Berezhkovskii; Ian R MacGillivray; Sergey M Bezrukov
Journal:  Phys Rev E       Date:  2021-01       Impact factor: 2.529

  6 in total

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