Literature DB >> 24082135

In vitro evolution of α-hemolysin using a liposome display.

Satoshi Fujii1, Tomoaki Matsuura, Takeshi Sunami, Yasuaki Kazuta, Tetsuya Yomo.   

Abstract

In vitro methods have enabled the rapid and efficient evolution of proteins and successful generation of novel and highly functional proteins. However, the available methods consider only globular proteins (e.g., antibodies, enzymes) and not membrane proteins despite the biological and pharmaceutical importance of the latter. In this study, we report the development of a method called liposome display that can evolve the properties of membrane proteins entirely in vitro. This method, which involves in vitro protein synthesis inside liposomes, which are cell-sized phospholipid vesicles, was applied to the pore-forming activity of α-hemolysin, a membrane protein derived from Staphylococcus aureus. The obtained α-hemolysin mutant possessed only two point mutations but exhibited a 30-fold increase in its pore-forming activity compared with the WT. Given the ability to synthesize various membrane proteins and modify protein synthesis and functional screening conditions, this method will allow for the rapid and efficient evolution of a wide range of membrane proteins.

Entities:  

Keywords:  FACS; Giant unilamellar vesicles; PURE system; directed evolution; in vitro synthetic biology

Mesh:

Substances:

Year:  2013        PMID: 24082135      PMCID: PMC3801045          DOI: 10.1073/pnas.1314585110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Solubilization of a membrane protein by combinatorial supercharging.

Authors:  Agnes Hajduczki; Sudipta Majumdar; Marie Fricke; Isola A M Brown; Gregory A Weiss
Journal:  ACS Chem Biol       Date:  2011-01-14       Impact factor: 5.100

Review 2.  Inserting proteins into the bacterial cytoplasmic membrane using the Sec and YidC translocases.

Authors:  Kun Xie; Ross E Dalbey
Journal:  Nat Rev Microbiol       Date:  2008-03       Impact factor: 60.633

Review 3.  Production of membrane proteins using cell-free expression systems.

Authors:  Daniel Schwarz; Volker Dötsch; Frank Bernhard
Journal:  Proteomics       Date:  2008-10       Impact factor: 3.984

4.  Directed evolution of a G protein-coupled receptor for expression, stability, and binding selectivity.

Authors:  Casim A Sarkar; Igor Dodevski; Manca Kenig; Stefan Dudli; Anja Mohr; Emmanuel Hermans; Andreas Plückthun
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-23       Impact factor: 11.205

5.  Population analysis of structural properties of giant liposomes by flow cytometry.

Authors:  Kazuya Nishimura; Tomohiro Hosoi; Takeshi Sunami; Taro Toyota; Masanori Fujinami; Koichi Oguma; Tomoaki Matsuura; Hiroaki Suzuki; Tetsuya Yomo
Journal:  Langmuir       Date:  2009-09-15       Impact factor: 3.882

Review 6.  Membrane protein expression: no cells required.

Authors:  Federico Katzen; Todd C Peterson; Wieslaw Kudlicki
Journal:  Trends Biotechnol       Date:  2009-07-16       Impact factor: 19.536

7.  Kinetic analysis of β-galactosidase and β-glucuronidase tetramerization coupled with protein translation.

Authors:  Tomoaki Matsuura; Kazufumi Hosoda; Norikazu Ichihashi; Yasuaki Kazuta; Tetsuya Yomo
Journal:  J Biol Chem       Date:  2011-04-29       Impact factor: 5.157

8.  High yield cell-free production of integral membrane proteins without refolding or detergents.

Authors:  Jessica J Wuu; James R Swartz
Journal:  Biochim Biophys Acta       Date:  2008-02-11

9.  Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision.

Authors:  Gerald M Cherf; Kate R Lieberman; Hytham Rashid; Christopher E Lam; Kevin Karplus; Mark Akeson
Journal:  Nat Biotechnol       Date:  2012-02-14       Impact factor: 54.908

10.  Quantifying epistatic interactions among the components constituting the protein translation system.

Authors:  Tomoaki Matsuura; Yasuaki Kazuta; Takuyo Aita; Jiro Adachi; Tetsuya Yomo
Journal:  Mol Syst Biol       Date:  2009-08-18       Impact factor: 11.429

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  27 in total

1.  A Tunable Microfluidic Device Enables Cargo Encapsulation by Cell- or Organelle-Sized Lipid Vesicles Comprising Asymmetric Lipid Bilayers.

Authors:  Valentin Romanov; John McCullough; Bruce K Gale; Adam Frost
Journal:  Adv Biosyst       Date:  2019-05-27

2.  Building a synthetic mechanosensitive signaling pathway in compartmentalized artificial cells.

Authors:  James W Hindley; Daniela G Zheleva; Yuval Elani; Kalypso Charalambous; Laura M C Barter; Paula J Booth; Charlotte L Bevan; Robert V Law; Oscar Ces
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-01       Impact factor: 11.205

3.  Liposome display for in vitro selection and evolution of membrane proteins.

Authors:  Satoshi Fujii; Tomoaki Matsuura; Takeshi Sunami; Takehiro Nishikawa; Yasuaki Kazuta; Tetsuya Yomo
Journal:  Nat Protoc       Date:  2014-06-05       Impact factor: 13.491

Review 4.  Hierarchical design of artificial proteins and complexes toward synthetic structural biology.

Authors:  Ryoichi Arai
Journal:  Biophys Rev       Date:  2017-12-14

5.  Organelle-mimicking liposome dissociates G-quadruplexes and facilitates transcription.

Authors:  Smritimoy Pramanik; Hisae Tateishi-Karimata; Naoki Sugimoto
Journal:  Nucleic Acids Res       Date:  2014-10-21       Impact factor: 16.971

Review 6.  Conceptual and methodological advances in cell-free directed evolution.

Authors:  Igor Dodevski; George C Markou; Casim A Sarkar
Journal:  Curr Opin Struct Biol       Date:  2015-06-18       Impact factor: 6.809

Review 7.  Engineered transmembrane pores.

Authors:  Mariam Ayub; Hagan Bayley
Journal:  Curr Opin Chem Biol       Date:  2016-09-20       Impact factor: 8.822

Review 8.  Advances in the directed evolution of proteins.

Authors:  Michael D Lane; Burckhard Seelig
Journal:  Curr Opin Chem Biol       Date:  2014-10-11       Impact factor: 8.822

Review 9.  Building protein networks in synthetic systems from the bottom-up.

Authors:  Jiyoung Shim; Chuqing Zhou; Ting Gong; Dasha Aleksandra Iserlis; Hamad Abdullah Linjawi; Matthew Wong; Tingrui Pan; Cheemeng Tan
Journal:  Biotechnol Adv       Date:  2021-04-12       Impact factor: 17.681

Review 10.  Engineering protocells: prospects for self-assembly and nanoscale production-lines.

Authors:  David M Miller; Jacqueline M Gulbis
Journal:  Life (Basel)       Date:  2015-03-25
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