Literature DB >> 24901741

Liposome display for in vitro selection and evolution of membrane proteins.

Satoshi Fujii1, Tomoaki Matsuura2, Takeshi Sunami3, Takehiro Nishikawa1, Yasuaki Kazuta1, Tetsuya Yomo4.   

Abstract

Liposome display is a novel method for in vitro selection and directed evolution of membrane proteins. In this approach, membrane proteins of interest are displayed on liposome membranes through translation from a single DNA molecule by using an encapsulated cell-free translation system. The liposomes are probed with a fluorescence indicator that senses membrane protein activity and selected using a fluorescence-activated cell sorting (FACS) instrument. Consequently, DNA encoding a protein with a desired function can be obtained. By implementing this protocol, researchers can process a DNA library of 10(7) different mutants. A single round of the selection procedure requires 24 h for completion, and multiple iterations of this technique, which take 1-5 weeks, enable the isolation of a desired gene. As this protocol is conducted entirely in vitro, it enables the engineering of various proteins, including pore-forming proteins, transporters and receptors. As a useful example of the approach, here we detail a procedure for the in vitro evolution of α-hemolysin from Staphylococcus aureus for its pore-forming activity.

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Year:  2014        PMID: 24901741     DOI: 10.1038/nprot.2014.107

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  42 in total

1.  Do more complex organisms have a greater proportion of membrane proteins in their genomes?

Authors:  T J Stevens; I T Arkin
Journal:  Proteins       Date:  2000-06-01

Review 2.  In vitro display technologies: novel developments and applications.

Authors:  P Amstutz; P Forrer; C Zahnd; A Plückthun
Journal:  Curr Opin Biotechnol       Date:  2001-08       Impact factor: 9.740

3.  Drug-target network.

Authors:  Muhammed A Yildirim; Kwang-Il Goh; Michael E Cusick; Albert-László Barabási; Marc Vidal
Journal:  Nat Biotechnol       Date:  2007-10       Impact factor: 54.908

4.  Direct molecular evolution of detergent-stable G protein-coupled receptors using polymer encapsulated cells.

Authors:  Daniel J Scott; Andreas Plückthun
Journal:  J Mol Biol       Date:  2012-11-16       Impact factor: 5.469

5.  A controllable gene expression system in liposomes that includes a positive feedback loop.

Authors:  Shungo Kobori; Norikazu Ichihashi; Yasuaki Kazuta; Tetsuya Yomo
Journal:  Mol Biosyst       Date:  2013-03-20

6.  Crystallizing membrane proteins for structure-function studies using lipidic mesophases.

Authors:  Martin Caffrey
Journal:  Biochem Soc Trans       Date:  2011-06       Impact factor: 5.407

7.  Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction.

Authors:  Yasuaki Kazuta; Jiro Adachi; Tomoaki Matsuura; Naoaki Ono; Hirotada Mori; Tetsuya Yomo
Journal:  Mol Cell Proteomics       Date:  2008-05-02       Impact factor: 5.911

8.  Membrane-damaging action of staphylococcal alpha-toxin on phospholipid-cholesterol liposomes.

Authors:  M Watanabe; T Tomita; T Yasuda
Journal:  Biochim Biophys Acta       Date:  1987-04-23

9.  Man-made cell-like compartments for molecular evolution.

Authors:  D S Tawfik; A D Griffiths
Journal:  Nat Biotechnol       Date:  1998-07       Impact factor: 54.908

10.  The cell-free integration of a polytopic mitochondrial membrane protein into liposomes occurs cotranslationally and in a lipid-dependent manner.

Authors:  Ashley R Long; Catherine C O'Brien; Nathan N Alder
Journal:  PLoS One       Date:  2012-09-25       Impact factor: 3.240

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  39 in total

1.  The PURE system for the cell-free synthesis of membrane proteins.

Authors:  Yutetsu Kuruma; Takuya Ueda
Journal:  Nat Protoc       Date:  2015-08-13       Impact factor: 13.491

2.  Sustainable proliferation of liposomes compatible with inner RNA replication.

Authors:  Gakushi Tsuji; Satoshi Fujii; Takeshi Sunami; Tetsuya Yomo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

3.  A Tunable Microfluidic Device Enables Cargo Encapsulation by Cell- or Organelle-Sized Lipid Vesicles Comprising Asymmetric Lipid Bilayers.

Authors:  Valentin Romanov; John McCullough; Bruce K Gale; Adam Frost
Journal:  Adv Biosyst       Date:  2019-05-27

4.  Highly oriented photosynthetic reaction centers generate a proton gradient in synthetic protocells.

Authors:  Emiliano Altamura; Francesco Milano; Roberto R Tangorra; Massimo Trotta; Omar Hassan Omar; Pasquale Stano; Fabio Mavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

5.  Cell-Free Expression of a Plant Membrane Protein BrPT2 From Boesenbergia Rotunda.

Authors:  Yvonne Jing Mei Liew; Yean Kee Lee; Norzulaani Khalid; Noorsaadah Abd Rahman; Boon Chin Tan
Journal:  Mol Biotechnol       Date:  2021-02-09       Impact factor: 2.695

Review 6.  Hierarchical design of artificial proteins and complexes toward synthetic structural biology.

Authors:  Ryoichi Arai
Journal:  Biophys Rev       Date:  2017-12-14

7.  Cell-sized mechanosensitive and biosensing compartment programmed with DNA.

Authors:  Sagardip Majumder; Jonathan Garamella; Ying-Lin Wang; Maxwell DeNies; Vincent Noireaux; Allen P Liu
Journal:  Chem Commun (Camb)       Date:  2017-06-29       Impact factor: 6.222

Review 8.  Insights into protein structure, stability and function from saturation mutagenesis.

Authors:  Kritika Gupta; Raghavan Varadarajan
Journal:  Curr Opin Struct Biol       Date:  2018-03-02       Impact factor: 6.809

9.  Simple peptides derived from the ribosomal core potentiate RNA polymerase ribozyme function.

Authors:  Shunsuke Tagami; James Attwater; Philipp Holliger
Journal:  Nat Chem       Date:  2017-03-06       Impact factor: 24.427

10.  Intracellular directed evolution of proteins from combinatorial libraries based on conditional phage replication.

Authors:  Andreas K Brödel; Alfonso Jaramillo; Mark Isalan
Journal:  Nat Protoc       Date:  2017-08-10       Impact factor: 13.491

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