Literature DB >> 27658267

Engineered transmembrane pores.

Mariam Ayub1, Hagan Bayley2.   

Abstract

Today, hundreds of researchers are working on nanopores, making an impact in both basic science and biotechnology. Proteins remain the most versatile sources of nanopores, based on our ability to engineer them with sub-nanometer precision. Recent work aimed at the construction and discovery of novel pores has included unnatural amino acid mutagenesis and the application of selection techniques. The diversity of structures has now been increased through the development of helix-based pores as well as the better-known β barrels. New developments also include truncated pores, which pierce bilayers through lipid rearrangement, and hybrid pores, which do away with bilayers altogether. Pore dimers, which span two lipid bilayers, have been constructed and pores based on DNA nanostructures are gaining in importance. While nanopore DNA sequencing has received enthusiastic attention, protein pores have a wider range of potential applications, requiring specifications that will require engineering efforts to continue for years to come.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27658267      PMCID: PMC5123773          DOI: 10.1016/j.cbpa.2016.08.005

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  71 in total

1.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

2.  Stochastic transport through carbon nanotubes in lipid bilayers and live cell membranes.

Authors:  Jia Geng; Kyunghoon Kim; Jianfei Zhang; Artur Escalada; Ramya Tunuguntla; Luis R Comolli; Frances I Allen; Anna V Shnyrova; Kang Rae Cho; Dayannara Munoz; Y Morris Wang; Costas P Grigoropoulos; Caroline M Ajo-Franklin; Vadim A Frolov; Aleksandr Noy
Journal:  Nature       Date:  2014-10-30       Impact factor: 49.962

Review 3.  Single molecule sensing with solid-state nanopores: novel materials, methods, and applications.

Authors:  Benjamin N Miles; Aleksandar P Ivanov; Kerry A Wilson; Fatma Doğan; Deanpen Japrung; Joshua B Edel
Journal:  Chem Soc Rev       Date:  2012-09-19       Impact factor: 54.564

4.  Molecular bases of cyclodextrin adapter interactions with engineered protein nanopores.

Authors:  Arijit Banerjee; Ellina Mikhailova; Stephen Cheley; Li-Qun Gu; Michelle Montoya; Yasuo Nagaoka; Eric Gouaux; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-16       Impact factor: 11.205

5.  Functional truncated membrane pores.

Authors:  David Stoddart; Mariam Ayub; Lajos Höfler; Pinky Raychaudhuri; Jochen W Klingelhoefer; Giovanni Maglia; Andrew Heron; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

6.  Artificial nanopores that mimic the transport selectivity of the nuclear pore complex.

Authors:  Tijana Jovanovic-Talisman; Jaclyn Tetenbaum-Novatt; Anna Sophia McKenney; Anton Zilman; Reiner Peters; Michael P Rout; Brian T Chait
Journal:  Nature       Date:  2008-12-21       Impact factor: 49.962

Review 7.  Emerging Targets in Photopharmacology.

Authors:  Michael M Lerch; Mickel J Hansen; Gooitzen M van Dam; Wiktor Szymanski; Ben L Feringa
Journal:  Angew Chem Int Ed Engl       Date:  2016-07-04       Impact factor: 16.823

8.  Ionic permeability and mechanical properties of DNA origami nanoplates on solid-state nanopores.

Authors:  Calin Plesa; Adithya N Ananth; Veikko Linko; Coen Gülcher; Allard J Katan; Hendrik Dietz; Cees Dekker
Journal:  ACS Nano       Date:  2013-12-05       Impact factor: 15.881

9.  An engineered dimeric protein pore that spans adjacent lipid bilayers.

Authors:  Shiksha Mantri; K Tanuj Sapra; Stephen Cheley; Thomas H Sharp; Hagan Bayley
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  High-throughput optical sensing of nucleic acids in a nanopore array.

Authors:  Shuo Huang; Mercedes Romero-Ruiz; Oliver K Castell; Hagan Bayley; Mark I Wallace
Journal:  Nat Nanotechnol       Date:  2015-08-31       Impact factor: 39.213

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  24 in total

1.  Probing membrane protein properties using droplet interface bilayers.

Authors:  Maxwell Allen-Benton; Heather E Findlay; Paula J Booth
Journal:  Exp Biol Med (Maywood)       Date:  2019-05-03

Review 2.  Building membrane nanopores.

Authors:  Stefan Howorka
Journal:  Nat Nanotechnol       Date:  2017-07-06       Impact factor: 39.213

Review 3.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

4.  Ion Mobility-Mass Spectrometry Reveals That α-Hemolysin from Staphylococcus aureus Simultaneously Forms Hexameric and Heptameric Complexes in Detergent Micelle Solutions.

Authors:  Jesse W Wilson; Amber D Rolland; Grant M Klausen; James S Prell
Journal:  Anal Chem       Date:  2019-07-18       Impact factor: 6.986

5.  Aberrantly Large Single-Channel Conductance of Polyhistidine Arm-Containing Protein Nanopores.

Authors:  Avinash Kumar Thakur; Motahareh Ghahari Larimi; Kristin Gooden; Liviu Movileanu
Journal:  Biochemistry       Date:  2017-08-28       Impact factor: 3.162

6.  Kinetics of Membrane Protein-Detergent Interactions Depend on Protein Electrostatics.

Authors:  Aaron J Wolfe; Jack F Gugel; Min Chen; Liviu Movileanu
Journal:  J Phys Chem B       Date:  2018-10-05       Impact factor: 2.991

Review 7.  Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

Authors:  Charlotte I Lynch; Shanlin Rao; Mark S P Sansom
Journal:  Chem Rev       Date:  2020-08-25       Impact factor: 60.622

Review 8.  Perspective and Prospectus on Single-Entity Electrochemistry.

Authors:  Lane A Baker
Journal:  J Am Chem Soc       Date:  2018-11-13       Impact factor: 15.419

9.  Capturing single molecules by nanopores: measured times and thermodynamics.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  Phys Chem Chem Phys       Date:  2021-01-21       Impact factor: 3.676

Review 10.  Single-molecule nanopore enzymology.

Authors:  Kherim Willems; Veerle Van Meervelt; Carsten Wloka; Giovanni Maglia
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

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