Literature DB >> 24070107

Geometric and electronic structure contributions to function in non-heme iron enzymes.

Edward I Solomon1, Kenneth M Light, Lei V Liu, Martin Srnec, Shaun D Wong.   

Abstract

Mononuclear non-heme Fe (NHFe) enzymes play key roles in DNA repair, the biosynthesis of antibiotics, the response to hypoxia, cancer therapy, and many other biological processes. These enzymes catalyze a diverse range of oxidation reactions, including hydroxylation, halogenation, ring closure, desaturation, and electrophilic aromatic substitution (EAS). Most of these enzymes use an Fe(II) site to activate dioxygen, but traditional spectroscopic methods have not allowed researchers to insightfully probe these ferrous active sites. We have developed a methodology that provides detailed geometric and electronic structure insights into these NHFe(II) active sites. Using these data, we have defined a general mechanistic strategy that many of these enzymes use: they control O2 activation (and limit autoxidation and self-hydroxylation) by allowing Fe(II) coordination unsaturation only in the presence of cosubstrates. Depending on the type of enzyme, O2 activation either involves a 2e(-) reduced Fe(III)-OOH intermediate or a 4e(-) reduced Fe(IV)═O intermediate. Nuclear resonance vibrational spectroscopy (NRVS) has provided the geometric structure of these intermediates, and magnetic circular dichroism (MCD) has defined the frontier molecular orbitals (FMOs), the electronic structure that controls reactivity. This Account emphasizes that experimental spectroscopy is critical in evaluating the results of electronic structure calculations. Therefore these data are a key mechanistic bridge between structure and reactivity. For the Fe(III)-OOH intermediates, the anticancer drug activated bleomycin (BLM) acts as the non-heme Fe analog of compound 0 in heme (e.g., P450) chemistry. However BLM shows different reactivity: the low-spin (LS) Fe(III)-OOH can directly abstract a H atom from DNA. The LS and high-spin (HS) Fe(III)-OOHs have fundamentally different transition states. The LS transition state goes through a hydroxyl radical, but the HS transition state is activated for EAS without O-O cleavage. This activation is important in one class of NHFe enzymes that utilizes a HS Fe(III)-OOH intermediate in dioxygenation. For Fe(IV)═O intermediates, the LS form has a π-type FMO activated for attack perpendicular to the Fe-O bond. However, the HS form (present in the NHFe enzymes) has a π FMO activated perpendicular to the Fe-O bond and a σ FMO positioned along the Fe-O bond. For the NHFe enzymes, the presence of π and σ FMOs enables enzymatic control in determining the type of reactivity: EAS or H-atom extraction for one substrate with different enzymes and halogenation or hydroxylation for one enzyme with different substrates.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24070107      PMCID: PMC3905672          DOI: 10.1021/ar400149m

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  23 in total

1.  Heme-Containing Oxygenases.

Authors:  Masanori Sono; Mark P. Roach; Eric D. Coulter; John H. Dawson
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

Review 2.  Finding intermediates in the O2 activation pathways of non-heme iron oxygenases.

Authors:  E G Kovaleva; M B Neibergall; S Chakrabarty; J D Lipscomb
Journal:  Acc Chem Res       Date:  2007-06-14       Impact factor: 22.384

3.  π-Frontier molecular orbitals in S = 2 ferryl species and elucidation of their contributions to reactivity.

Authors:  Martin Srnec; Shaun D Wong; Jason England; Lawrence Que; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

4.  The crystal structure of a high-spin oxoiron(IV) complex and characterization of its self-decay pathway.

Authors:  Jason England; Yisong Guo; Erik R Farquhar; Victor G Young; Eckard Münck; Lawrence Que
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

5.  Spectroscopic studies of the mononuclear non-heme Fe(II) enzyme FIH: second-sphere contributions to reactivity.

Authors:  Kenneth M Light; John A Hangasky; Michael J Knapp; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-06-20       Impact factor: 15.419

6.  Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes.

Authors:  Michael L Neidig; Andrea Decker; Oliver W Choroba; Fanglu Huang; Michael Kavana; Graham R Moran; Jonathan B Spencer; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-18       Impact factor: 11.205

7.  Activated bleomycin. A transient complex of drug, iron, and oxygen that degrades DNA.

Authors:  R M Burger; J Peisach; S B Horwitz
Journal:  J Biol Chem       Date:  1981-11-25       Impact factor: 5.157

8.  Substrate positioning controls the partition between halogenation and hydroxylation in the aliphatic halogenase, SyrB2.

Authors:  Megan L Matthews; Christopher S Neumann; Linde A Miles; Tyler L Grove; Squire J Booker; Carsten Krebs; Christopher T Walsh; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-06       Impact factor: 11.205

9.  Comparison of high-spin and low-spin nonheme Fe(III)-OOH complexes in O-O bond homolysis and H-atom abstraction reactivities.

Authors:  Lei V Liu; Seungwoo Hong; Jaeheung Cho; Wonwoo Nam; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-02-14       Impact factor: 15.419

10.  VTVH-MCD and DFT studies of thiolate bonding to [FeNO]7/[FeO2]8 complexes of isopenicillin N synthase: substrate determination of oxidase versus oxygenase activity in nonheme Fe enzymes.

Authors:  Christina D Brown; Michael L Neidig; Matthew B Neibergall; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-05-17       Impact factor: 15.419

View more
  40 in total

1.  Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase.

Authors:  Brent S Rivard; Melanie S Rogers; Daniel J Marell; Matthew B Neibergall; Sarmistha Chakrabarty; Christopher J Cramer; John D Lipscomb
Journal:  Biochemistry       Date:  2015-07-21       Impact factor: 3.162

2.  Evidence that oxidative dephosphorylation by the nonheme Fe(II), α-ketoglutarate:UMP oxygenase occurs by stereospecific hydroxylation.

Authors:  Anwesha Goswami; Xiaodong Liu; Wenlong Cai; Thomas P Wyche; Tim S Bugni; Maïa Meurillon; Suzanne Peyrottes; Christian Perigaud; Koichi Nonaka; Jürgen Rohr; Steven G Van Lanen
Journal:  FEBS Lett       Date:  2017-01-25       Impact factor: 4.124

3.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

4.  Experimental and theoretical studies of the porphyrin ligand effect on the electronic structure and reactivity of oxoiron(iv) porphyrin π-cation-radical complexes.

Authors:  Yuri Ishimizu; Zhifeng Ma; Masahiko Hada; Hiroshi Fujii
Journal:  J Biol Inorg Chem       Date:  2019-05-21       Impact factor: 3.358

5.  In-crystal reaction cycle of a toluene-bound diiron hydroxylase.

Authors:  Justin F Acheson; Lucas J Bailey; Thomas C Brunold; Brian G Fox
Journal:  Nature       Date:  2017-03-27       Impact factor: 49.962

Review 6.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

Review 7.  Protein effects in non-heme iron enzyme catalysis: insights from multiscale models.

Authors:  Nathalie Proos Vedin; Marcus Lundberg
Journal:  J Biol Inorg Chem       Date:  2016-06-30       Impact factor: 3.358

Review 8.  Activation of Dioxygen by Iron and Manganese Complexes: A Heme and Nonheme Perspective.

Authors:  Sumit Sahu; David P Goldberg
Journal:  J Am Chem Soc       Date:  2016-08-30       Impact factor: 15.419

9.  O2 Activation by Nonheme FeII α-Ketoglutarate-Dependent Enzyme Variants: Elucidating the Role of the Facial Triad Carboxylate in FIH.

Authors:  Shyam R Iyer; Vanessa D Chaplin; Michael J Knapp; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-09-10       Impact factor: 15.419

10.  Evaluation of a concerted vs. sequential oxygen activation mechanism in α-ketoglutarate-dependent nonheme ferrous enzymes.

Authors:  Serra Goudarzi; Shyam R Iyer; Jeffrey T Babicz; James J Yan; Günther H J Peters; Hans E M Christensen; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-24       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.