Literature DB >> 16920789

Spectroscopic and electronic structure studies of aromatic electrophilic attack and hydrogen-atom abstraction by non-heme iron enzymes.

Michael L Neidig1, Andrea Decker, Oliver W Choroba, Fanglu Huang, Michael Kavana, Graham R Moran, Jonathan B Spencer, Edward I Solomon.   

Abstract

(4-Hydroxy)mandelate synthase (HmaS) and (4-hydroxyphenyl)pyruvate dioxygenase (HPPD) are two alpha-keto acid dependent mononuclear non-heme iron enzymes that use the same substrate, (4-hydroxyphenyl)pyruvate, but exhibit two different general reactivities. HmaS performs hydrogen-atom abstraction to yield benzylic hydroxylated product (S)-(4-hydroxy)mandelate, whereas HPPD utilizes an electrophilic attack mechanism that results in aromatic hydroxylated product homogentisate. These enzymes provide a unique opportunity to directly evaluate the similarities and differences in the reaction pathways used for these two reactivities. An Fe(II) methodology using CD, magnetic CD, and variable-temperature, variable-field magnetic CD spectroscopies was applied to HmaS and compared with that for HPPD to evaluate the factors that affect substrate interactions at the active site and to correlate these to the different reactivities exhibited by HmaS and HPPD to the same substrate. Combined with density functional theory calculations, we found that HmaS and HPPD have similar substrate-bound complexes and that the role of the protein pocket in determining the different reactivities exhibited by these enzymes (hydrogen-atom abstraction vs. aromatic electrophilic attack) is to properly orient the substrate, allowing for ligand field geometric changes along the reaction coordinate. Elongation of the Fe(IV) O bond in the transition state leads to dominant Fe(III) O(*-) character, which significantly contributes to the reactivity with either the aromatic pi-system or the C H sigma-bond.

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Year:  2006        PMID: 16920789      PMCID: PMC1559736          DOI: 10.1073/pnas.0605067103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Geometric and electronic structure/function correlations in non-heme iron enzymes.

Authors:  E I Solomon; T C Brunold; M I Davis; J N Kemsley; S K Lee; N Lehnert; F Neese; A J Skulan; Y S Yang; J Zhou
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

2.  Steady state kinetics of 4-hydroxyphenylpyruvate dioxygenase from human liver (III).

Authors:  M Rundgren
Journal:  J Biol Chem       Date:  1977-07-25       Impact factor: 5.157

3.  Spectroscopic studies of substrate interactions with clavaminate synthase 2, a multifunctional alpha-KG-dependent non-heme iron enzyme: correlation with mechanisms and reactivities.

Authors:  J Zhou; W L Kelly; B O Bachmann; M Gunsior; C A Townsend; E I Solomon
Journal:  J Am Chem Soc       Date:  2001-08-01       Impact factor: 15.419

4.  The mechanism of enzymic formation of homogentisate from p-hydroxyphenylpyruvate.

Authors:  B Lindblad; G Lindstedt; S Lindstedt
Journal:  J Am Chem Soc       Date:  1970-12-16       Impact factor: 15.419

5.  Crystal structure of Pseudomonas fluorescens 4-hydroxyphenylpyruvate dioxygenase: an enzyme involved in the tyrosine degradation pathway.

Authors:  L Serre; A Sailland; D Sy; P Boudec; A Rolland; E Pebay-Peyroula; C Cohen-Addad
Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

6.  (4-Hydroxyphenyl)pyruvate dioxygenase from Streptomyces avermitilis: the basis for ordered substrate addition.

Authors:  Kayunta Johnson-Winters; Vincent M Purpero; Michael Kavana; Tamara Nelson; Graham R Moran
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

7.  The crystal structures of Zea mays and Arabidopsis 4-hydroxyphenylpyruvate dioxygenase.

Authors:  Iris M Fritze; Lars Linden; Jörg Freigang; Günter Auerbach; Robert Huber; Stefan Steinbacher
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8.  2.0A resolution crystal structures of the ternary complexes of human phenylalanine hydroxylase catalytic domain with tetrahydrobiopterin and 3-(2-thienyl)-L-alanine or L-norleucine: substrate specificity and molecular motions related to substrate binding.

Authors:  Ole Andreas Andersen; Anne J Stokka; Torgeir Flatmark; Edward Hough
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

9.  4-Hydroxyphenylpyruvate dioxygenase: a hybrid density functional study of the catalytic reaction mechanism.

Authors:  Tomasz Borowski; Arianna Bassan; Per E M Siegbahn
Journal:  Biochemistry       Date:  2004-09-28       Impact factor: 3.162

10.  EXAFS spectroscopic evidence for an Fe=O unit in the Fe(IV) intermediate observed during oxygen activation by taurine:alpha-ketoglutarate dioxygenase.

Authors:  Pamela J Riggs-Gelasco; John C Price; Robert B Guyer; Jessica H Brehm; Eric W Barr; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2004-07-07       Impact factor: 15.419

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  49 in total

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Authors:  Sason Shaik; Hui Chen; Deepa Janardanan
Journal:  Nat Chem       Date:  2010-12-15       Impact factor: 24.427

2.  Profile of Edward I. Solomon.

Authors:  Nick Zagorski
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-21       Impact factor: 11.205

3.  Near-IR MCD of the nonheme ferrous active site in naphthalene 1,2-dioxygenase: correlation to crystallography and structural insight into the mechanism of Rieske dioxygenases.

Authors:  Takehiro Ohta; Sarmistha Chakrabarty; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2008-01-12       Impact factor: 15.419

4.  A combined NRVS and DFT study of Fe(IV)=O model complexes: a diagnostic method for the elucidation of non-heme iron enzyme intermediates.

Authors:  Caleb B Bell; Shaun D Wong; Yuming Xiao; Eric J Klinker; Adam L Tenderholt; Matt C Smith; Jan-Uwe Rohde; Lawrence Que; Stephen P Cramer; Edward I Solomon
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

5.  π-Frontier molecular orbitals in S = 2 ferryl species and elucidation of their contributions to reactivity.

Authors:  Martin Srnec; Shaun D Wong; Jason England; Lawrence Que; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

6.  Activation of α-keto acid-dependent dioxygenases: application of an {FeNO}7/{FeO2}8 methodology for characterizing the initial steps of O2 activation.

Authors:  Adrienne R Diebold; Christina D Brown-Marshall; Michael L Neidig; June M Brownlee; Graham R Moran; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2011-10-21       Impact factor: 15.419

7.  Theoretical study of cyclohexane hydroxylation by three possible isomers of [FeIV(O)(R-TPEN)] 2+: does the pentadentate ligand wrapping around the metal center differently lead to the different stability and reactivity?

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Journal:  J Biol Inorg Chem       Date:  2009-01-27       Impact factor: 3.358

8.  Hydrogen-bonding effects on the reactivity of [X-Fe(III)-O-Fe(IV)═O] (X = OH, F) complexes toward C-H bond cleavage.

Authors:  Genqiang Xue; Caiyun Geng; Shengfa Ye; Adam T Fiedler; Frank Neese; Lawrence Que
Journal:  Inorg Chem       Date:  2013-03-15       Impact factor: 5.165

9.  Spectroscopic Evidence for the Two C-H-Cleaving Intermediates of Aspergillus nidulans Isopenicillin N Synthase.

Authors:  Esta Tamanaha; Bo Zhang; Yisong Guo; Wei-Chen Chang; Eric W Barr; Gang Xing; Jennifer St Clair; Shengfa Ye; Frank Neese; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2016-07-05       Impact factor: 15.419

10.  Peroxo and oxo intermediates in mononuclear nonheme iron enzymes and related active sites.

Authors:  Edward I Solomon; Shaun D Wong; Lei V Liu; Andrea Decker; Marina S Chow
Journal:  Curr Opin Chem Biol       Date:  2009-03-09       Impact factor: 8.822

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