Literature DB >> 27229513

Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Tibor András Rokob1, Jakub Chalupský2, Daniel Bím2, Prokopis C Andrikopoulos2, Martin Srnec3, Lubomír Rulíšek4.   

Abstract

In this minireview, we provide an account of the current state-of-the-art developments in the area of mono- and binuclear non-heme enzymes (NHFe and NHFe2) and the smaller NHFe(2) synthetic models, mostly from a theoretical and computational perspective. The sheer complexity, and at the same time the beauty, of the NHFe(2) world represents a challenge for experimental as well as theoretical methods. We emphasize that the concerted progress on both theoretical and experimental side is a conditio sine qua non for future understanding, exploration and utilization of the NHFe(2) systems. After briefly discussing the current challenges and advances in the computational methodology, we review the recent spectroscopic and computational studies of NHFe(2) enzymatic and inorganic systems and highlight the correlations between various experimental data (spectroscopic, kinetic, thermodynamic, electrochemical) and computations. Throughout, we attempt to keep in mind the most fascinating and attractive phenomenon in the NHFe(2) chemistry, which is the fact that despite the strong oxidative power of many reactive intermediates, the NHFe(2) enzymes perform catalysis with high selectivity. We conclude with our personal viewpoint and hope that further developments in quantum chemistry and especially in the field of multireference wave function methods are needed to have a solid theoretical basis for the NHFe(2) studies, mostly by providing benchmarking and calibration of the computationally efficient and easy-to-use DFT methods.

Entities:  

Keywords:  Density functional theory; Dioxygen activation; Multireference methods; Non-heme iron; Reactivity

Mesh:

Substances:

Year:  2016        PMID: 27229513     DOI: 10.1007/s00775-016-1357-8

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  205 in total

1.  Radical intermediates in monooxygenase reactions of rieske dioxygenases.

Authors:  Sarmistha Chakrabarty; Rachel N Austin; Dayi Deng; John T Groves; John D Lipscomb
Journal:  J Am Chem Soc       Date:  2007-03-07       Impact factor: 15.419

2.  π-Frontier molecular orbitals in S = 2 ferryl species and elucidation of their contributions to reactivity.

Authors:  Martin Srnec; Shaun D Wong; Jason England; Lawrence Que; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

Review 3.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

4.  Does the TauD enzyme always hydroxylate alkanes, while an analogous synthetic non-heme reagent always desaturates them?

Authors:  Dandamudi Usharani; Deepa Janardanan; Sason Shaik
Journal:  J Am Chem Soc       Date:  2010-12-20       Impact factor: 15.419

5.  S K-edge X-ray absorption spectroscopy and density functional theory studies of high and low spin {FeNO}7 thiolate complexes: exchange stabilization of electron delocalization in {FeNO}7 and {FeO2}8.

Authors:  Ning Sun; Lei V Liu; Abhishek Dey; Gloria Villar-Acevedo; Julie A Kovacs; Marcetta Y Darensbourg; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Inorg Chem       Date:  2010-12-15       Impact factor: 5.165

6.  On the catalytic mechanism of (S)-2-hydroxypropylphosphonic acid epoxidase (HppE): a hybrid DFT study.

Authors:  Anna Miłaczewska; Ewa Broclawik; Tomasz Borowski
Journal:  Chemistry       Date:  2012-11-13       Impact factor: 5.236

7.  Identification of a low-spin acylperoxoiron(III) intermediate in bio-inspired non-heme iron-catalysed oxidations.

Authors:  Williamson N Oloo; Katlyn K Meier; Yong Wang; Sason Shaik; Eckard Münck; Lawrence Que
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

8.  Substrate positioning controls the partition between halogenation and hydroxylation in the aliphatic halogenase, SyrB2.

Authors:  Megan L Matthews; Christopher S Neumann; Linde A Miles; Tyler L Grove; Squire J Booker; Carsten Krebs; Christopher T Walsh; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-06       Impact factor: 11.205

9.  Accurate calculations of geometries and singlet-triplet energy differences for active-site models of [NiFe] hydrogenase.

Authors:  Mickaël G Delcey; Kristine Pierloot; Quan M Phung; Steven Vancoillie; Roland Lindh; Ulf Ryde
Journal:  Phys Chem Chem Phys       Date:  2014-05-07       Impact factor: 3.676

10.  Spectroscopic and Computational Studies of Nitrile Hydratase: Insights into Geometric and Electronic Structure and the Mechanism of Amide Synthesis.

Authors:  Kenneth M Light; Yasuaki Yamanaka; Masafumi Odaka; Edward I Solomon
Journal:  Chem Sci       Date:  2015-07-30       Impact factor: 9.825

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  5 in total

1.  Frontier Molecular Orbital Contributions to Chlorination versus Hydroxylation Selectivity in the Non-Heme Iron Halogenase SyrB2.

Authors:  Martin Srnec; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-02-02       Impact factor: 15.419

2.  Proton-Electron Transfer to the Active Site Is Essential for the Reaction Mechanism of Soluble Δ9-Desaturase.

Authors:  Daniel Bím; Jakub Chalupský; Martin Culka; Edward I Solomon; Lubomír Rulíšek; Martin Srnec
Journal:  J Am Chem Soc       Date:  2020-05-29       Impact factor: 15.419

3.  Beyond the classical thermodynamic contributions to hydrogen atom abstraction reactivity.

Authors:  Daniel Bím; Mauricio Maldonado-Domínguez; Lubomír Rulíšek; Martin Srnec
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-25       Impact factor: 11.205

4.  Free Rather Than Total Iron Content Is Critically Linked to the Fur Physiology in Shewanella oneidensis.

Authors:  Lulu Liu; Xue Feng; Wei Wang; Yining Chen; Zhe Chen; Haichun Gao
Journal:  Front Microbiol       Date:  2020-11-26       Impact factor: 5.640

Review 5.  Recent Advances in the Siderophore Biology of Shewanella.

Authors:  Lulu Liu; Wei Wang; Shihua Wu; Haichun Gao
Journal:  Front Microbiol       Date:  2022-02-17       Impact factor: 5.640

  5 in total

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