Literature DB >> 30376310

Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Konstantinos D Vogiatzis1, Mikhail V Polynski2, Justin K Kirkland1, Jacob Townsend1, Ali Hashemi3, Chong Liu3, Evgeny A Pidko2,3.   

Abstract

Computational chemistry provides a versatile toolbox for studying mechanistic details of catalytic reactions and holds promise to deliver practical strategies to enable the rational in silico catalyst design. The versatile reactivity and nontrivial electronic structure effects, common for systems based on 3d transition metals, introduce additional complexity that may represent a particular challenge to the standard computational strategies. In this review, we discuss the challenges and capabilities of modern electronic structure methods for studying the reaction mechanisms promoted by 3d transition metal molecular catalysts. Particular focus will be placed on the ways of addressing the multiconfigurational problem in electronic structure calculations and the role of expert bias in the practical utilization of the available methods. The development of density functionals designed to address transition metals is also discussed. Special emphasis is placed on the methods that account for solvation effects and the multicomponent nature of practical catalytic systems. This is followed by an overview of recent computational studies addressing the mechanistic complexity of catalytic processes by molecular catalysts based on 3d metals. Cases that involve noninnocent ligands, multicomponent reaction systems, metal-ligand and metal-metal cooperativity, as well as modeling complex catalytic systems such as metal-organic frameworks are presented. Conventionally, computational studies on catalytic mechanisms are heavily dependent on the chemical intuition and expert input of the researcher. Recent developments in advanced automated methods for reaction path analysis hold promise for eliminating such human-bias from computational catalysis studies. A brief overview of these approaches is presented in the final section of the review. The paper is closed with general concluding remarks.

Entities:  

Year:  2018        PMID: 30376310      PMCID: PMC6396130          DOI: 10.1021/acs.chemrev.8b00361

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  479 in total

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Authors:  D Schröder; S Shaik; H Schwarz
Journal:  Acc Chem Res       Date:  2000-03       Impact factor: 22.384

2.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

3.  Prediction of electronic excited states of adsorbates on metal surfaces from first principles.

Authors:  T Klüner; N Govind; Y A Wang; E A Carter
Journal:  Phys Rev Lett       Date:  2001-06-25       Impact factor: 9.161

4.  Theoretical Methods for the Description of the Solvent Effect in Biomolecular Systems.

Authors:  Modesto Orozco; F. Javier Luque
Journal:  Chem Rev       Date:  2000-11-08       Impact factor: 60.622

5.  Theoretical Studies of Some Transition-Metal-Mediated Reactions of Industrial and Synthetic Importance.

Authors:  Maricel Torrent; Miquel Solà; Gernot Frenking
Journal:  Chem Rev       Date:  2000-02-09       Impact factor: 60.622

6.  Highly Polar Metal-Metal Bonds in "Early-Late" Heterodimetallic Complexes.

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Journal:  Angew Chem Int Ed Engl       Date:  2000-08-04       Impact factor: 15.336

7.  Aromatic Aminations by Heterogeneous Ni(0)/C Catalysis We thank the NIH (GM 40 287) for supporting our programs, and the Sumitomo Chemical Co. Ltd. for a research assistantship awarded to H.U.

Authors:  Bruce H. Lipshutz; Hiroshi Ueda
Journal:  Angew Chem Int Ed Engl       Date:  2000-12-15       Impact factor: 15.336

8.  Crystallographic and FTIR spectroscopic evidence of changes in Fe coordination upon reduction of the active site of the Fe-only hydrogenase from Desulfovibrio desulfuricans.

Authors:  Y Nicolet; A L de Lacey; X Vernède; V M Fernandez; E C Hatchikian; J C Fontecilla-Camps
Journal:  J Am Chem Soc       Date:  2001-02-28       Impact factor: 15.419

9.  Electronic structure description of the mu(4)-sulfide bridged tetranuclear Cu(Z) center in N(2)O reductase.

Authors:  Peng Chen; Serena DeBeer George; Inês Cabrito; William E Antholine; José J G Moura; Isabel Moura; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2002-02-06       Impact factor: 15.419

10.  Molecular dynamics simulations of the mononuclear zinc-beta-lactamase from Bacillus cereus complexed with benzylpenicillin and a quantum chemical study of the reaction mechanism.

Authors:  N Díaz; D Suárez; K M Merz
Journal:  J Am Chem Soc       Date:  2001-10-10       Impact factor: 15.419

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  17 in total

1.  Mechanisms, Challenges, and Opportunities of Dual Ni/Photoredox-Catalyzed C(sp2)-C(sp3) Cross-Couplings.

Authors:  Mingbin Yuan; Osvaldo Gutierrez
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2021-09-21

2.  The (not so) simple prediction of enantioselectivity - a pipeline for high-fidelity computations.

Authors:  Rubén Laplaza; Jan-Grimo Sobez; Matthew D Wodrich; Markus Reiher; Clémence Corminboeuf
Journal:  Chem Sci       Date:  2022-05-18       Impact factor: 9.969

3.  On the Nature of C(sp3)-C(sp2) Bond Formation in Nickel-Catalyzed Tertiary Radical Cross-Couplings: A Case Study of Ni/Photoredox Catalytic Cross-Coupling of Alkyl Radicals and Aryl Halides.

Authors:  Mingbin Yuan; Zhihui Song; Shorouk O Badir; Gary A Molander; Osvaldo Gutierrez
Journal:  J Am Chem Soc       Date:  2020-04-01       Impact factor: 15.419

4.  Hierarchy of Commonly Used DFT Methods for Predicting the Thermochemistry of Rh-Mediated Chemical Transformations.

Authors:  Bilal Ahmad Shiekh
Journal:  ACS Omega       Date:  2019-09-13

5.  Iron-Catalyzed Reductive Coupling of Alkyl Iodides with Alkynes To Yield cis-Olefins: Mechanistic Insights from Computation.

Authors:  Andrea Darù; Xile Hu; Jeremy N Harvey
Journal:  ACS Omega       Date:  2020-01-15

6.  Operando Modeling of Multicomponent Reactive Solutions in Homogeneous Catalysis: from Non-standard Free Energies to Reaction Network Control.

Authors:  Pavel O Kuliaev; Evgeny A Pidko
Journal:  ChemCatChem       Date:  2019-12-11       Impact factor: 5.686

7.  Is silver a mere terminal oxidant in palladium catalyzed C-H bond activation reactions?

Authors:  Bangaru Bhaskararao; Sukriti Singh; Megha Anand; Pritha Verma; Prafull Prakash; Athira C; Santanu Malakar; Henry F Schaefer; Raghavan B Sunoj
Journal:  Chem Sci       Date:  2019-11-13       Impact factor: 9.825

Review 8.  A Review on the Promising Plasma-Assisted Preparation of Electrocatalysts.

Authors:  Feng Yu; Mincong Liu; Cunhua Ma; Lanbo Di; Bin Dai; Lili Zhang
Journal:  Nanomaterials (Basel)       Date:  2019-10-10       Impact factor: 5.076

9.  Doubly-Charged Negative Ions as Novel Tunable Catalysts: Graphene and Fullerene Molecules Versus Atomic Metals.

Authors:  Kelvin Suggs; Alfred Z Msezane
Journal:  Int J Mol Sci       Date:  2020-09-13       Impact factor: 5.923

10.  Impact of Ligands and Metals on the Formation of Metallacyclic Intermediates and a Nontraditional Mechanism for Group VI Alkyne Metathesis Catalysts.

Authors:  Richard R Thompson; Madeline E Rotella; Xin Zhou; Frank R Fronczek; Osvaldo Gutierrez; Semin Lee
Journal:  J Am Chem Soc       Date:  2021-06-10       Impact factor: 15.419

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