Literature DB >> 28346937

In-crystal reaction cycle of a toluene-bound diiron hydroxylase.

Justin F Acheson1, Lucas J Bailey1, Thomas C Brunold2, Brian G Fox1.   

Abstract

Electrophilic aromatic substitution is one of the most important and recognizable classes of organic chemical transformation. Enzymes create the strong electrophiles that are needed for these highly energetic reactions by using O2, electrons, and metals or other cofactors. Although the nature of the oxidants that carry out electrophilic aromatic substitution has been deduced from many approaches, it has been difficult to determine their structures. Here we show the structure of a diiron hydroxylase intermediate formed during a reaction with toluene. Density functional theory geometry optimizations of an active site model reveal that the intermediate is an arylperoxo Fe2+/Fe3+ species with delocalized aryl radical character. The structure suggests that a carboxylate ligand of the diiron centre may trigger homolytic cleavage of the O-O bond by transferring a proton from a metal-bound water. Our work provides the spatial and electronic constraints needed to propose a comprehensive mechanism for diiron enzyme arene hydroxylation that accounts for many prior experimental results.

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Year:  2017        PMID: 28346937     DOI: 10.1038/nature21681

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  44 in total

1.  (Mu-1,2-peroxo)diiron(III/III) complex as a precursor to the diiron(III/IV) intermediate X in the assembly of the iron-radical cofactor of ribonucleotide reductase from mouse.

Authors:  Danny Yun; Ricardo García-Serres; Brandon M Chicalese; Young H An; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2007-01-27       Impact factor: 3.162

2.  Crystallographic and catalytic studies of the peroxide-shunt reaction in a diiron hydroxylase.

Authors:  Lucas J Bailey; Brian G Fox
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

3.  Substrate probe for the mechanism of aromatic hydroxylation catalyzed by cytochrome P450.

Authors:  J F Darbyshire; K R Iyer; J Grogan; K R Korzekwa; W F Trager
Journal:  Drug Metab Dispos       Date:  1996-09       Impact factor: 3.922

4.  Intermediates in the oxygenation of a nonheme diiron(II) complex, including the first evidence for a bound superoxo species.

Authors:  Xiaopeng Shan; Lawrence Que
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-31       Impact factor: 11.205

5.  Azide and acetate complexes plus two iron-depleted crystal structures of the di-iron enzyme delta9 stearoyl-acyl carrier protein desaturase. Implications for oxygen activation and catalytic intermediates.

Authors:  Martin Moche; John Shanklin; Alokesh Ghoshal; Ylva Lindqvist
Journal:  J Biol Chem       Date:  2003-04-18       Impact factor: 5.157

6.  Active site threonine facilitates proton transfer during dioxygen activation at the diiron center of toluene/o-xylene monooxygenase hydroxylase.

Authors:  Woon Ju Song; Michael S McCormick; Rachel K Behan; Matthew H Sazinsky; Wei Jiang; Jeffery Lin; Carsten Krebs; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2010-10-06       Impact factor: 15.419

7.  Evidence for C-H cleavage by an iron-superoxide complex in the glycol cleavage reaction catalyzed by myo-inositol oxygenase.

Authors:  Gang Xing; Yinghui Diao; Lee M Hoffart; Eric W Barr; K Sandeep Prabhu; Ryan J Arner; C Channa Reddy; Carsten Krebs; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

8.  Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.

Authors:  Bigna Wörsdörfer; Mahesh Lingaraju; Neela H Yennawar; Amie K Boal; Carsten Krebs; J Martin Bollinger; Maria-Eirini Pandelia
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-06       Impact factor: 11.205

9.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

10.  Structural basis for biomolecular recognition in overlapping binding sites in a diiron enzyme system.

Authors:  Justin F Acheson; Lucas J Bailey; Nathaniel L Elsen; Brian G Fox
Journal:  Nat Commun       Date:  2014-09-24       Impact factor: 14.919

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  21 in total

Review 1.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

Review 2.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

3.  CmlI N-Oxygenase Catalyzes the Final Three Steps in Chloramphenicol Biosynthesis without Dissociation of Intermediates.

Authors:  Anna J Komor; Brent S Rivard; Ruixi Fan; Yisong Guo; Lawrence Que; John D Lipscomb
Journal:  Biochemistry       Date:  2017-09-06       Impact factor: 3.162

4.  Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.

Authors:  Andrew J Mitchell; Noah P Dunham; Ryan J Martinie; Jonathan A Bergman; Christopher J Pollock; Kai Hu; Benjamin D Allen; Wei-Chen Chang; Alexey Silakov; J Martin Bollinger; Carsten Krebs; Amie K Boal
Journal:  J Am Chem Soc       Date:  2017-09-20       Impact factor: 15.419

5.  Proton-Electron Transfer to the Active Site Is Essential for the Reaction Mechanism of Soluble Δ9-Desaturase.

Authors:  Daniel Bím; Jakub Chalupský; Martin Culka; Edward I Solomon; Lubomír Rulíšek; Martin Srnec
Journal:  J Am Chem Soc       Date:  2020-05-29       Impact factor: 15.419

6.  Peroxide Activation for Electrophilic Reactivity by the Binuclear Non-heme Iron Enzyme AurF.

Authors:  Kiyoung Park; Ning Li; Yeonju Kwak; Martin Srnec; Caleb B Bell; Lei V Liu; Shaun D Wong; Yoshitaka Yoda; Shinji Kitao; Makoto Seto; Michael Hu; Jiyong Zhao; Carsten Krebs; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-05-10       Impact factor: 15.419

7.  Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.

Authors:  Effie C Kisgeropoulos; Julia J Griese; Zachary R Smith; Rui M M Branca; Camille R Schneider; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2020-03-09       Impact factor: 15.419

8.  De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.

Authors:  Shao-Qing Zhang; Marco Chino; Lijun Liu; Youzhi Tang; Xiaozhen Hu; William F DeGrado; Angela Lombardi
Journal:  J Am Chem Soc       Date:  2018-01-22       Impact factor: 15.419

9.  Unprecedented (μ-1,1-Peroxo)diferric Structure for the Ambiphilic Orange Peroxo Intermediate of the Nonheme N-Oxygenase CmlI.

Authors:  Andrew J Jasniewski; Anna J Komor; John D Lipscomb; Lawrence Que
Journal:  J Am Chem Soc       Date:  2017-07-19       Impact factor: 15.419

10.  A di-iron protein recruited as an Fe[II] and oxygen sensor for bacterial chemotaxis functions by stabilizing an iron-peroxy species.

Authors:  Alise R Muok; Yijie Deng; Vadim M Gumerov; Jenna E Chong; Jennifer R DeRosa; Kurni Kurniyati; Rachael E Coleman; Kyle M Lancaster; Chunhao Li; Igor B Zhulin; Brian R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-03       Impact factor: 11.205

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