Literature DB >> 23996014

Intra- and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure.

Sharon Pepenella1, Kevin J Murphy, Jeffrey J Hayes.   

Abstract

Eukaryotic chromatin is a hierarchical collection of nucleoprotein structures that package DNA to form chromosomes. The initial levels of packaging include folding of long strings of nucleosomes into secondary structures and array-array association into higher-order tertiary chromatin structures. The core histone tail domains are required for the assembly of higher-order structures and mediate short- and long-range intra- and inter-nucleosome interactions with both DNA and protein targets to direct their assembly. However, important details of these interactions remain unclear and are a subject of much interest and recent investigations. Here, we review work defining the interactions of the histone N-terminal tails with DNA and protein targets relevant to chromatin higher-order structures, with a specific emphasis on the contributions of H3 and H4 tails to oligonucleosome folding and stabilization. We evaluate both classic and recent experiments determining tail structures, effect of tail cleavage/loss, and posttranslational modifications of the tails on nucleosomes and nucleosome arrays, as well as inter-nucleosomal and inter-array interactions of the H3 and H4 N-terminal tails.

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Year:  2013        PMID: 23996014      PMCID: PMC3938996          DOI: 10.1007/s00412-013-0435-8

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  89 in total

Review 1.  Chromatin organization - the 30 nm fiber.

Authors:  Sergei A Grigoryev; Christopher L Woodcock
Journal:  Exp Cell Res       Date:  2012-02-24       Impact factor: 3.905

Review 2.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

Review 3.  Electron microscopy and atomic force microscopy studies of chromatin and metaphase chromosome structure.

Authors:  Joan-Ramon Daban
Journal:  Micron       Date:  2011-05-12       Impact factor: 2.251

4.  Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR.

Authors:  Hidenori Kato; Hugo van Ingen; Bing-Rui Zhou; Hanqiao Feng; Michael Bustin; Lewis E Kay; Yawen Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

5.  Nucleosome linker DNA contacts and induces specific folding of the intrinsically disordered H1 carboxyl-terminal domain.

Authors:  Tamara L Caterino; He Fang; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2011-04-04       Impact factor: 4.272

Review 6.  The role of the nucleosome acidic patch in modulating higher order chromatin structure.

Authors:  Anna A Kalashnikova; Mary E Porter-Goff; Uma M Muthurajan; Karolin Luger; Jeffrey C Hansen
Journal:  J R Soc Interface       Date:  2013-02-27       Impact factor: 4.118

7.  Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure.

Authors:  Yoshinori Nishino; Mikhail Eltsov; Yasumasa Joti; Kazuki Ito; Hideaki Takata; Yukio Takahashi; Saera Hihara; Achilleas S Frangakis; Naoko Imamoto; Tetsuya Ishikawa; Kazuhiro Maeshima
Journal:  EMBO J       Date:  2012-02-17       Impact factor: 11.598

8.  Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 Å resolution.

Authors:  Karim-Jean Armache; Joseph D Garlick; Daniele Canzio; Geeta J Narlikar; Robert E Kingston
Journal:  Science       Date:  2011-11-18       Impact factor: 47.728

9.  The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association.

Authors:  Abdollah Allahverdi; Renliang Yang; Nikolay Korolev; Yanping Fan; Curt A Davey; Chuan-Fa Liu; Lars Nordenskiöld
Journal:  Nucleic Acids Res       Date:  2010-11-02       Impact factor: 16.971

10.  Structure of RCC1 chromatin factor bound to the nucleosome core particle.

Authors:  Ravindra D Makde; Joseph R England; Hemant P Yennawar; Song Tan
Journal:  Nature       Date:  2010-08-25       Impact factor: 49.962

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  52 in total

1.  Reconstitution of mitotic chromatids with a minimum set of purified factors.

Authors:  Keishi Shintomi; Tatsuro S Takahashi; Tatsuya Hirano
Journal:  Nat Cell Biol       Date:  2015-06-15       Impact factor: 28.824

Review 2.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

3.  Interplay among nucleosomal DNA, histone tails, and corepressor CoREST underlies LSD1-mediated H3 demethylation.

Authors:  Simona Pilotto; Valentina Speranzini; Marcello Tortorici; Dominique Durand; Alexander Fish; Sergio Valente; Federico Forneris; Antonello Mai; Titia K Sixma; Patrice Vachette; Andrea Mattevi
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

4.  Histone Acetylation Regulates Chromatin Accessibility: Role of H4K16 in Inter-nucleosome Interaction.

Authors:  Ruihan Zhang; Jochen Erler; Jörg Langowski
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

5.  Unraveling the mechanisms of chromatin fibril packaging.

Authors:  Alexey A Gavrilov; Yuri Y Shevelyov; Sergey V Ulianov; Ekaterina E Khrameeva; Pavel Kos; Alexander Chertovich; Sergey V Razin
Journal:  Nucleus       Date:  2016-05-03       Impact factor: 4.197

6.  DNA-Protein Cross-Link Formation in Nucleosome Core Particles Treated with Methyl Methanesulfonate.

Authors:  Kun Yang; Marc M Greenberg
Journal:  Chem Res Toxicol       Date:  2019-09-18       Impact factor: 3.739

Review 7.  3D genomics imposes evolution of the domain model of eukaryotic genome organization.

Authors:  Sergey V Razin; Yegor S Vassetzky
Journal:  Chromosoma       Date:  2016-06-10       Impact factor: 4.316

Review 8.  Pioneer Transcription Factors Initiating Gene Network Changes.

Authors:  Kenneth S Zaret
Journal:  Annu Rev Genet       Date:  2020-09-04       Impact factor: 16.830

Review 9.  Nuclear organization mediates cancer-compromised genetic and epigenetic control.

Authors:  Sayyed K Zaidi; Andrew J Fritz; Kirsten M Tracy; Jonathan A Gordon; Coralee E Tye; Joseph Boyd; Andre J Van Wijnen; Jeffrey A Nickerson; Antony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  Adv Biol Regul       Date:  2018-05-09

10.  Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain.

Authors:  Fanfan Hao; Kevin J Murphy; Tomoya Kujirai; Naoki Kamo; Junko Kato; Masako Koyama; Akimitsu Okamato; Gosuke Hayashi; Hitoshi Kurumizaka; Jeffrey J Hayes
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

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