Literature DB >> 22343941

Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure.

Yoshinori Nishino1, Mikhail Eltsov, Yasumasa Joti, Kazuki Ito, Hideaki Takata, Yukio Takahashi, Saera Hihara, Achilleas S Frangakis, Naoko Imamoto, Tetsuya Ishikawa, Kazuhiro Maeshima.   

Abstract

How a long strand of genomic DNA is compacted into a mitotic chromosome remains one of the basic questions in biology. The nucleosome fibre, in which DNA is wrapped around core histones, has long been assumed to be folded into a 30-nm chromatin fibre and further hierarchical regular structures to form mitotic chromosomes, although the actual existence of these regular structures is controversial. Here, we show that human mitotic HeLa chromosomes are mainly composed of irregularly folded nucleosome fibres rather than 30-nm chromatin fibres. Our comprehensive and quantitative study using cryo-electron microscopy and synchrotron X-ray scattering resolved the long-standing contradictions regarding the existence of 30-nm chromatin structures and detected no regular structure >11 nm. Our finding suggests that the mitotic chromosome consists of irregularly arranged nucleosome fibres, with a fractal nature, which permits a more dynamic and flexible genome organization than would be allowed by static regular structures.

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Year:  2012        PMID: 22343941      PMCID: PMC3321210          DOI: 10.1038/emboj.2012.35

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  49 in total

1.  Methods for reconstructing density maps of "single" particles from cryoelectron micrographs to subnanometer resolution.

Authors:  J F Conway; A C Steven
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  The cell in absence of aggregation artifacts.

Authors:  J Dubochet; N Sartori Blanc
Journal:  Micron       Date:  2001-01       Impact factor: 2.251

Review 3.  The making of the mitotic chromosome: modern insights into classical questions.

Authors:  Jason R Swedlow; Tatsuya Hirano
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

4.  A two-step scaffolding model for mitotic chromosome assembly.

Authors:  Kazuhiro Maeshima; Ulrich K Laemmli
Journal:  Dev Cell       Date:  2003-04       Impact factor: 12.270

5.  Spatial and temporal regulation of Condensins I and II in mitotic chromosome assembly in human cells.

Authors:  Takao Ono; Yuda Fang; David L Spector; Tatsuya Hirano
Journal:  Mol Biol Cell       Date:  2004-05-14       Impact factor: 4.138

6.  A mechanical basis for chromosome function.

Authors:  Nancy Kleckner; Denise Zickler; Gareth H Jones; Job Dekker; Ruth Padmore; Jim Henle; John Hutchinson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-06       Impact factor: 11.205

7.  Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers.

Authors:  Nick Gilbert; Shelagh Boyle; Heike Fiegler; Kathryn Woodfine; Nigel P Carter; Wendy A Bickmore
Journal:  Cell       Date:  2004-09-03       Impact factor: 41.582

8.  Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei.

Authors:  Margot P Scheffer; Mikhail Eltsov; Achilleas S Frangakis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

9.  Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.

Authors:  Curt A Davey; David F Sargent; Karolin Luger; Armin W Maeder; Timothy J Richmond
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

10.  Engineered chromosome regions with altered sequence composition demonstrate hierarchical large-scale folding within metaphase chromosomes.

Authors:  Yuri G Strukov; Yan Wang; Andrew S Belmont
Journal:  J Cell Biol       Date:  2003-06-30       Impact factor: 10.539

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  121 in total

1.  Human mitotic chromosome structure: what happened to the 30-nm fibre?

Authors:  Jeffrey C Hansen
Journal:  EMBO J       Date:  2012-03-13       Impact factor: 11.598

Review 2.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

3.  Fractal Characterization of Chromatin Decompaction in Live Cells.

Authors:  Ji Yi; Yolanda Stypula-Cyrus; Catherine S Blaha; Hemant K Roy; Vadim Backman
Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

4.  Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.

Authors:  Sergei A Grigoryev; Gavin Bascom; Jenna M Buckwalter; Michael B Schubert; Christopher L Woodcock; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

Review 5.  Intra- and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure.

Authors:  Sharon Pepenella; Kevin J Murphy; Jeffrey J Hayes
Journal:  Chromosoma       Date:  2013-08-31       Impact factor: 4.316

6.  Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging.

Authors:  A G Cherstvy; V B Teif
Journal:  J Biol Phys       Date:  2013-01-17       Impact factor: 1.365

7.  Micro- and nanofluidic technologies for epigenetic profiling.

Authors:  Toshiki Matsuoka; Byoung Choul Kim; Christopher Moraes; Minsub Han; Shuichi Takayama
Journal:  Biomicrofluidics       Date:  2013-07-24       Impact factor: 2.800

Review 8.  Large-scale chromatin organization: the good, the surprising, and the still perplexing.

Authors:  Andrew S Belmont
Journal:  Curr Opin Cell Biol       Date:  2013-11-13       Impact factor: 8.382

9.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06

10.  Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.

Authors:  Adrian L Sanborn; Suhas S P Rao; Su-Chen Huang; Neva C Durand; Miriam H Huntley; Andrew I Jewett; Ivan D Bochkov; Dharmaraj Chinnappan; Ashok Cutkosky; Jian Li; Kristopher P Geeting; Andreas Gnirke; Alexandre Melnikov; Doug McKenna; Elena K Stamenova; Eric S Lander; Erez Lieberman Aiden
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-23       Impact factor: 11.205

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