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Literature DB >> 27286720

3D genomics imposes evolution of the domain model of eukaryotic genome organization.

Sergey V Razin^1,2,3, Yegor S Vassetzky^4,5,6.

Abstract

The hypothesis that the genome is composed of a patchwork of structural and functional domains (units) that may be either active or repressed was proposed almost 30 years ago. Here, we examine the evolution of the domain model of eukaryotic genome organization in view of the expansion of genome-scale techniques in the twenty-first century that have provided us with a wealth of information on genome organization, folding, and functioning.

Keywords: Chromatin; Domains; Epigenetics; Large-scale organization

Mesh：

Substances：
Chromatin

Year: 2016 PMID： 27286720 DOI： 10.1007/s00412-016-0604-7

Source DB: PubMed Journal: Chromosoma ISSN： 0009-5915 Impact factor: 4.316

149 in total

Review 1. Histone acetylation: a switch between repressive and permissive chromatin. Second in review series on chromatin dynamics.

Authors: Anton Eberharter; Peter B Becker
Journal: EMBO Rep Date: 2002-03 Impact factor: 8.807

2. Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors: Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal: Mol Cell Date: 2002-12 Impact factor: 17.970

3. A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

Authors: W C Forrester; E Epner; M C Driscoll; T Enver; M Brice; T Papayannopoulou; M Groudine
Journal: Genes Dev Date: 1990-10 Impact factor: 11.361

4. Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states.

Authors: Pierre J Fabre; Alexander Benke; Elisabeth Joye; Thi Hanh Nguyen Huynh; Suliana Manley; Denis Duboule
Journal: Proc Natl Acad Sci U S A Date: 2015-10-26 Impact factor: 11.205

5. A position-effect assay for boundaries of higher order chromosomal domains.

Authors: R Kellum; P Schedl
Journal: Cell Date: 1991-03-08 Impact factor: 41.582

6. Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.

Authors: P N Cockerill; W T Garrard
Journal: Cell Date: 1986-01-31 Impact factor: 41.582

3D genomics imposes evolution of the domain model of eukaryotic genome organization.

Review 1. Histone acetylation: a switch between repressive and permissive chromatin. Second in review series on chromatin dynamics.

2. Looping and interaction between hypersensitive sites in the active beta-globin locus.

3. A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

4. Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states.

5. A position-effect assay for boundaries of higher order chromosomal domains.

6. Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.

7. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

8. Formation of Chromosomal Domains by Loop Extrusion.

9. Characterization of nuclear structures containing superhelical DNA.

10. A dynamical model reveals gene co-localizations in nucleus.

Review 1. Chromothripsis, a credible chromosomal mechanism in evolutionary process.

Review 2. The 10-nm chromatin fiber and its relationship to interphase chromosome organization.

Review 3. Gene functioning and storage within a folded genome.

4. Tight DNA-protein complexes isolated from barley seedlings are rich in potential guanine quadruplex sequences.