Literature DB >> 23865948

Synergistic effects of mutations in cytochrome P450cam designed to mimic CYP101D1.

Dipanwita Batabyal1, Huiying Li, Thomas L Poulos.   

Abstract

A close orthologue to cytochrome P450cam (CYP101A1) that catalyzes the same hydroxylation of camphor to 5-exo-hydroxycamphor is CYP101D1. There are potentially important differences in and around the active site that could contribute to subtle functional differences. Adjacent to the heme iron ligand, Cys357, is Leu358 in P450cam, whereas this residue is Ala in CYP101D1. Leu358 plays a role in binding of the P450cam redox partner, putidaredoxin (Pdx). On the opposite side of the heme, about 15-20 Å away, Asp251 in P450cam plays a critical role in a proton relay network required for O2 activation but forms strong ion pairs with Arg186 and Lys178. In CYP101D1 Gly replaces Lys178. Thus, the local electrostatic environment and ion pairing are substantially different in CYP101D1. These sites have been systematically mutated in P450cam to the corresponding residues in CYP101D1 and the mutants analyzed by crystallography, kinetics, and UV-vis spectroscopy. Individually, the mutants have little effect on activity or structure, but in combination there is a major drop in enzyme activity. This loss in activity is due to the mutants being locked in the low-spin state, which prevents electron transfer from the P450cam redox partner, Pdx. These studies illustrate the strong synergistic effects on well-separated parts of the structure in controlling the equilibrium between the open (low-spin) and closed (high-spin) conformational states.

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Year:  2013        PMID: 23865948      PMCID: PMC3790332          DOI: 10.1021/bi400676d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  39 in total

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Authors:  T OMURA; R SATO
Journal:  J Biol Chem       Date:  1964-07       Impact factor: 5.157

2.  Mechanism of O2 activation by cytochrome P450cam studied by isotope effects and transient state kinetics.

Authors:  Matthew M Purdy; Laura S Koo; Paul R Ortiz de Montellano; Judith P Klinman
Journal:  Biochemistry       Date:  2006-12-26       Impact factor: 3.162

3.  Coupling of spin, substrate, and redox equilibria in cytochrome P450.

Authors:  S G Sligar
Journal:  Biochemistry       Date:  1976-11-30       Impact factor: 3.162

4.  Crystallographic study on the dioxygen complex of wild-type and mutant cytochrome P450cam. Implications for the dioxygen activation mechanism.

Authors:  Shingo Nagano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2005-06-30       Impact factor: 5.157

5.  Roles of the axial push effect in cytochrome P450cam studied with the site-directed mutagenesis at the heme proximal site.

Authors:  S Yoshioka; S Takahashi; K Ishimori; I Morishima
Journal:  J Inorg Biochem       Date:  2000-08-31       Impact factor: 4.155

6.  Specific and non-specific effects of potassium cations on substrate-protein interactions in cytochromes P450cam and P450lin.

Authors:  Eric Deprez; Edward Gill; Volkhard Helms; Rebecca C Wade; Gaston Hui Bon Hoa
Journal:  J Inorg Biochem       Date:  2002-09-20       Impact factor: 4.155

7.  Production and characterization of a functional putidaredoxin reductase-putidaredoxin covalent complex.

Authors:  Inna Y Churbanova; Thomas L Poulos; Irina F Sevrioukova
Journal:  Biochemistry       Date:  2010-01-12       Impact factor: 3.162

8.  Alteration of P450 distal pocket solvent leads to impaired proton delivery and changes in heme geometry.

Authors:  Thomas M Makris; Konstanze von Koenig; Ilme Schlichting; Stephen G Sligar
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

9.  Crystal structure of putidaredoxin, the [2Fe-2S] component of the P450cam monooxygenase system from Pseudomonas putida.

Authors:  Irina F Sevrioukova; Carlos Garcia; Huiying Li; B Bhaskar; Thomas L Poulos
Journal:  J Mol Biol       Date:  2003-10-17       Impact factor: 5.469

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  10 in total

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Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 2.  Fluorinated porphyrinoids as efficient platforms for new photonic materials, sensors, and therapeutics.

Authors:  N V S Dinesh K Bhupathiraju; Waqar Rizvi; James D Batteas; Charles Michael Drain
Journal:  Org Biomol Chem       Date:  2016-01-14       Impact factor: 3.876

3.  Effect of Redox Partner Binding on Cytochrome P450 Conformational Dynamics.

Authors:  Dipanwita Batabyal; Logan S Richards; Thomas L Poulos
Journal:  J Am Chem Soc       Date:  2017-09-07       Impact factor: 15.419

4.  Structure of cytochrome P450 2B4 with an acetate ligand and an active site hydrogen bond network similar to oxyferrous P450cam.

Authors:  Yuting Yang; Weishu Bu; Sangchoul Im; Jennifer Meagher; Jeanne Stuckey; Lucy Waskell
Journal:  J Inorg Biochem       Date:  2018-04-30       Impact factor: 4.155

5.  A Comparative Analysis of the Effector Role of Redox Partner Binding in Bacterial P450s.

Authors:  Dipanwita Batabyal; Ariel Lewis-Ballester; Syun-Ru Yeh; Thomas L Poulos
Journal:  Biochemistry       Date:  2016-11-15       Impact factor: 3.162

6.  An Intermediate Conformational State of Cytochrome P450cam-CN in Complex with Putidaredoxin.

Authors:  Shih-Wei Chuo; Lee-Ping Wang; R David Britt; David B Goodin
Journal:  Biochemistry       Date:  2019-04-26       Impact factor: 3.162

7.  Current state and future perspectives of cytochrome P450 enzymes for C-H and C=C oxygenation.

Authors:  Yu Yan; Jing Wu; Guipeng Hu; Cong Gao; Liang Guo; Xiulai Chen; Liming Liu; Wei Song
Journal:  Synth Syst Biotechnol       Date:  2022-05-08

8.  Kinetic solvent isotope effect in steady-state turnover by CYP19A1 suggests involvement of Compound 1 for both hydroxylation and aromatization steps.

Authors:  Yogan Khatri; Abhinav Luthra; Ruchia Duggal; Stephen G Sligar
Journal:  FEBS Lett       Date:  2014-07-02       Impact factor: 4.124

9.  Crystal structures and functional characterization of wild-type CYP101D1 and its active site mutants.

Authors:  Dipanwita Batabyal; Thomas L Poulos
Journal:  Biochemistry       Date:  2013-11-27       Impact factor: 3.162

10.  Kinetic solvent isotope effect in human P450 CYP17A1-mediated androgen formation: evidence for a reactive peroxoanion intermediate.

Authors:  Michael C Gregory; Ilia G Denisov; Yelena V Grinkova; Yogan Khatri; Stephen G Sligar
Journal:  J Am Chem Soc       Date:  2013-10-29       Impact factor: 15.419

  10 in total

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