Literature DB >> 24261604

Crystal structures and functional characterization of wild-type CYP101D1 and its active site mutants.

Dipanwita Batabyal1, Thomas L Poulos.   

Abstract

Although CYP101D1 and P450cam catalyze the same reaction at similar rates and share strikingly similar active site architectures, there are significant functional differences. CYP101D1 thus provides an opportunity to probe what structural and functional features must be shared and what features can differ but maintain the high catalytic efficiency. Crystal structures of the cyanide complex of wild-type CYP101D1 and it active site mutants, D259N and T260A, have been determined. The conformational changes in CYP101D1 upon cyanide binding are very similar to those of P450cam, indicating a similar mechanism for proton delivery during oxygen activation using solvent-assisted proton transfer. The D259N-CN- complex shows a perturbed solvent structure compared to that of the wild type, which is similar to what was observed in the oxy complex of the corresonding D251N mutant in P450cam. As in P450cam, the T260A mutant is highly uncoupled while the D259N mutant gives barely detectable activity. Despite these similarities, CYP101D1 is able to use the P450cam redox partners while P450cam cannot use the CYP101D1 redox partners. Thus, the strict requirement of P450cam for its own redox partner is relaxed in CYP101D1. Differences in the local environment of the essential Asp (Asp259 in CYP101D1) provide a strucutral basis for understanding these functional differences.

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Year:  2013        PMID: 24261604      PMCID: PMC3946301          DOI: 10.1021/bi401330c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  37 in total

1.  Laser flash induced electron transfer in P450cam monooxygenase: putidaredoxin reductase-putidaredoxin interaction.

Authors:  I F Sevrioukova; J T Hazzard; G Tollin; T L Poulos
Journal:  Biochemistry       Date:  2001-09-04       Impact factor: 3.162

2.  Crystal structures of cyanide complexes of P450cam and the oxygenase domain of inducible nitric oxide synthase-structural models of the short-lived oxygen complexes.

Authors:  Roman Fedorov; Dipak K Ghosh; Ilme Schlichting
Journal:  Arch Biochem Biophys       Date:  2003-01-01       Impact factor: 4.013

3.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

4.  The putidaredoxin reductase-putidaredoxin electron transfer complex: theoretical and experimental studies.

Authors:  Vadim Yu Kuznetsov; Emek Blair; Patrick J Farmer; Thomas L Poulos; Amanda Pifferitti; Irina F Sevrioukova
Journal:  J Biol Chem       Date:  2005-02-15       Impact factor: 5.157

5.  Crystallographic study on the dioxygen complex of wild-type and mutant cytochrome P450cam. Implications for the dioxygen activation mechanism.

Authors:  Shingo Nagano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2005-06-30       Impact factor: 5.157

6.  Putidaredoxin reductase, a new function for an old protein.

Authors:  Irina F Sevrioukova; Thomas L Poulos
Journal:  J Biol Chem       Date:  2002-05-13       Impact factor: 5.157

7.  Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam.

Authors:  Shingo Nagano; Hideo Shimada; Akiko Tarumi; Takako Hishiki; Yoko Kimata-Ariga; Tsuyoshi Egawa; Makoto Suematsu; Sam-Yong Park; Shin-ichi Adachi; Yoshitsugu Shiro; Yuzuru Ishimura
Journal:  Biochemistry       Date:  2003-12-16       Impact factor: 3.162

8.  Crystal structure of the cytochrome p450cam mutant that exhibits the same spectral perturbations induced by putidaredoxin binding.

Authors:  Shingo Nagano; Takehiko Tosha; Koichiro Ishimori; Isao Morishima; Thomas L Poulos
Journal:  J Biol Chem       Date:  2004-07-21       Impact factor: 5.157

9.  Crystal structure of the cytochrome P-450CAM active site mutant Thr252Ala.

Authors:  R Raag; S A Martinis; S G Sligar; T L Poulos
Journal:  Biochemistry       Date:  1991-12-03       Impact factor: 3.162

10.  Crystal structure of putidaredoxin, the [2Fe-2S] component of the P450cam monooxygenase system from Pseudomonas putida.

Authors:  Irina F Sevrioukova; Carlos Garcia; Huiying Li; B Bhaskar; Thomas L Poulos
Journal:  J Mol Biol       Date:  2003-10-17       Impact factor: 5.469

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  11 in total

1.  Unexpected Differences between Two Closely Related Bacterial P450 Camphor Monooxygenases.

Authors:  Vidhi C Murarka; Dipanwita Batabyal; Jose A Amaya; Irina F Sevrioukova; Thomas L Poulos
Journal:  Biochemistry       Date:  2020-07-15       Impact factor: 3.162

2.  Conformational selectivity in cytochrome P450 redox partner interactions.

Authors:  Scott A Hollingsworth; Dipanwita Batabyal; Brian D Nguyen; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-20       Impact factor: 11.205

3.  Effect of Redox Partner Binding on Cytochrome P450 Conformational Dynamics.

Authors:  Dipanwita Batabyal; Logan S Richards; Thomas L Poulos
Journal:  J Am Chem Soc       Date:  2017-09-07       Impact factor: 15.419

4.  A Comparative Analysis of the Effector Role of Redox Partner Binding in Bacterial P450s.

Authors:  Dipanwita Batabyal; Ariel Lewis-Ballester; Syun-Ru Yeh; Thomas L Poulos
Journal:  Biochemistry       Date:  2016-11-15       Impact factor: 3.162

5.  Ferryl protonation in oxoiron(IV) porphyrins and its role in oxygen transfer.

Authors:  Nicholas C Boaz; Seth R Bell; John T Groves
Journal:  J Am Chem Soc       Date:  2015-02-17       Impact factor: 15.419

6.  Effect of redox partner binding on CYP101D1 conformational dynamics.

Authors:  Dipanwita Batabyal; Thomas L Poulos
Journal:  J Inorg Biochem       Date:  2018-03-01       Impact factor: 4.155

7.  Molecular dynamics of the P450cam-Pdx complex reveals complex stability and novel interface contacts.

Authors:  Scott A Hollingsworth; Thomas L Poulos
Journal:  Protein Sci       Date:  2014-11-13       Impact factor: 6.725

8.  Proton Relay Network in the Bacterial P450s: CYP101A1 and CYP101D1.

Authors:  José A Amaya; Dipanwita Batabyal; Thomas L Poulos
Journal:  Biochemistry       Date:  2020-07-27       Impact factor: 3.162

9.  An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network.

Authors:  Igor D Petrik; Roman Davydov; Maximilian Kahle; Braddock Sandoval; Sudharsan Dwaraknath; Pia Ädelroth; Brian Hoffman; Yi Lu
Journal:  Biochemistry       Date:  2021-01-19       Impact factor: 3.162

10.  Ancient Bacterial Class Alphaproteobacteria Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species.

Authors:  Nomfundo Nzuza; Tiara Padayachee; Puleng Rosinah Syed; Justyna Dorota Kryś; Wanping Chen; Dominik Gront; David R Nelson; Khajamohiddin Syed
Journal:  Int J Mol Sci       Date:  2021-05-24       Impact factor: 5.923

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