Literature DB >> 27808504

A Comparative Analysis of the Effector Role of Redox Partner Binding in Bacterial P450s.

Dipanwita Batabyal1, Ariel Lewis-Ballester2, Syun-Ru Yeh2, Thomas L Poulos1.   

Abstract

The camphor monooxygenase, cytochrome P450cam, exhibits a strict requirement for its own redox partner, putidaredoxin (Pdx), a two-iron-sulfur ferredoxin. The closest homologue to P450cam, CYP101D1, is structurally very similar, uses a similar redox partner, and exhibits nearly identical enzymatic properties in the monooxygenation of camphor to give the same single 5-exo-hydroxy camphor product. However, CYP101D1 does not strictly require its own ferredoxin (Arx) for activity because Pdx can support CYP101D1 catalysis but Arx cannot support P450cam catalysis. We have further examined the differences between these two P450s by determining the effect of spin equilibrium, redox properties, and stability of oxygen complexes. We find that Arx shifts the spin state equilibrium toward high-spin, which is the opposite of the effect of Pdx on P450cam. In both P450s, redox partner binding destabilizes the oxy-P450 complex but this effect is much weaker with CYP101D1. In addition, resonance Raman data show that structural perturbations observed in P450cam upon addition of Pdx are absent in CYP101D1. These data indicate that Arx does not play the same effector role in catalysis as Pdx does with P450cam. The most relevant structural difference between these two P450s centers on a catalytically important Asp residue required for proton-coupled electron transfer. We postulate that with P450cam larger Pdx-assisted motions are required to free this Asp for catalysis while the smaller number of restrictions in CYP101D1 precludes the need for redox partner-assisted structural changes.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27808504      PMCID: PMC5448282          DOI: 10.1021/acs.biochem.6b00913

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

Review 1.  Interactions between redox partners in various cytochrome P450 systems: functional and structural aspects.

Authors:  D F Lewis; P Hlavica
Journal:  Biochim Biophys Acta       Date:  2000-11-20

2.  A model for effector activity in a highly specific biological electron transfer complex: the cytochrome P450(cam)-putidaredoxin couple.

Authors:  Susan Sondej Pochapsky; Thomas C Pochapsky; Julie W Wei
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

3.  The structure of CYP101D2 unveils a potential path for substrate entry into the active site.

Authors:  Wen Yang; Stephen G Bell; Hui Wang; Weihong Zhou; Mark Bartlam; Luet-Lok Wong; Zihe Rao
Journal:  Biochem J       Date:  2011-01-01       Impact factor: 3.857

4.  Molecular characterization of a class I P450 electron transfer system from Novosphingobium aromaticivorans DSM12444.

Authors:  Wen Yang; Stephen G Bell; Hui Wang; Weihong Zhou; Nicola Hoskins; Alison Dale; Mark Bartlam; Luet-Lok Wong; Zihe Rao
Journal:  J Biol Chem       Date:  2010-06-24       Impact factor: 5.157

5.  Direct observation of a novel perturbed oxyferrous catalytic intermediate during reduced putidaredoxin-initiated turnover of cytochrome P-450-CAM: probing the effector role of putidaredoxin in catalysis.

Authors:  Mary C Glascock; David P Ballou; John H Dawson
Journal:  J Biol Chem       Date:  2005-08-22       Impact factor: 5.157

Review 6.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

7.  Autooxidation and hydroxylation reactions of oxygenated cytochrome P-450cam.

Authors:  J D Lipscomb; S G Sligar; M J Namtvedt; I C Gunsalus
Journal:  J Biol Chem       Date:  1976-02-25       Impact factor: 5.157

8.  Conformational selectivity in cytochrome P450 redox partner interactions.

Authors:  Scott A Hollingsworth; Dipanwita Batabyal; Brian D Nguyen; Thomas L Poulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-20       Impact factor: 11.205

9.  Investigation of the low frequency dynamics of heme proteins: native and mutant cytochrome P450(cam) and redox partner complexes.

Authors:  Venugopal Karunakaran; Ilia Denisov; Stephen G Sligar; Paul M Champion
Journal:  J Phys Chem B       Date:  2011-03-10       Impact factor: 2.991

10.  A cytochrome P450 class I electron transfer system from Novosphingobium aromaticivorans.

Authors:  Stephen G Bell; Alison Dale; Nicholas H Rees; Luet-Lok Wong
Journal:  Appl Microbiol Biotechnol       Date:  2009-09-25       Impact factor: 4.813

View more
  5 in total

Review 1.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 2.  Molecular Dynamics Simulation for All.

Authors:  Scott A Hollingsworth; Ron O Dror
Journal:  Neuron       Date:  2018-09-19       Impact factor: 17.173

3.  Effect of Redox Partner Binding on Cytochrome P450 Conformational Dynamics.

Authors:  Dipanwita Batabyal; Logan S Richards; Thomas L Poulos
Journal:  J Am Chem Soc       Date:  2017-09-07       Impact factor: 15.419

Review 4.  Updating the Paradigm: Redox Partner Binding and Conformational Dynamics in Cytochromes P450.

Authors:  Thomas L Poulos; Alec H Follmer
Journal:  Acc Chem Res       Date:  2021-12-29       Impact factor: 22.384

5.  Effect of redox partner binding on CYP101D1 conformational dynamics.

Authors:  Dipanwita Batabyal; Thomas L Poulos
Journal:  J Inorg Biochem       Date:  2018-03-01       Impact factor: 4.155

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.