Literature DB >> 30994334

An Intermediate Conformational State of Cytochrome P450cam-CN in Complex with Putidaredoxin.

Shih-Wei Chuo1, Lee-Ping Wang1, R David Britt1, David B Goodin1.   

Abstract

Cytochrome P450cam is an archetypal example of the vast family of heme monooxygenases and serves as a model for an enzyme that is highly specific for both its substrate and reductase. During catalysis, it undergoes significant conformational changes of the F and G helices upon binding its substrate and redox partner, putidaredoxin (Pdx). Recent studies have shown that Pdx binding to the closed camphor-bound form of ferric P450cam results in its conversion to a fully open state. However, during catalytic turnover, it remains unclear whether this same conformational change also occurs or whether it is coupled to the formation of the critical compound I intermediate. Here, we have examined P450cam bound simultaneously by camphor, CN-, and Pdx as a mimic of the catalytically competent ferrous oxy-P450cam-Pdx state. The combined use of double electron-electron resonance and molecular dynamics showed direct observation of intermediate conformational states of the enzyme upon CN- and subsequent Pdx binding. This state is coupled to the movement of the I helix and residues at the active site, including Arg-186, Asp-251, and Thr-252. These movements enable occupation of a water molecule that has been implicated in proton delivery and peroxy bond cleavage to give compound I. These findings provide a detailed understanding of how the Pdx-induced conformational change may sequentially promote compound I formation followed by product release, while retaining stereoselective hydroxylation of the substrate of this highly specific monooxygenase.

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Year:  2019        PMID: 30994334      PMCID: PMC7185884          DOI: 10.1021/acs.biochem.9b00192

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  43 in total

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2.  Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate.

Authors:  Stefan Stoll; Young-Tae Lee; Mo Zhang; Richard F Wilson; R David Britt; David B Goodin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-23       Impact factor: 11.205

3.  Autooxidation and hydroxylation reactions of oxygenated cytochrome P-450cam.

Authors:  J D Lipscomb; S G Sligar; M J Namtvedt; I C Gunsalus
Journal:  J Biol Chem       Date:  1976-02-25       Impact factor: 5.157

4.  Effector Roles of Putidaredoxin on Cytochrome P450cam Conformational States.

Authors:  Shu-Hao Liou; Mavish Mahomed; Young-Tae Lee; David B Goodin
Journal:  J Am Chem Soc       Date:  2016-08-05       Impact factor: 15.419

5.  High-resolution crystal structure of cytochrome P450cam.

Authors:  T L Poulos; B C Finzel; A J Howard
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

6.  Camphor binding by Pseudomonas putida cytochrome P-450. Kinetics and thermodynamics of the reaction.

Authors:  B W Griffin; J A Peterson
Journal:  Biochemistry       Date:  1972-12-05       Impact factor: 3.162

7.  Electron paramagnetic resonance detectable states of cytochrome P-450cam.

Authors:  J D Lipscomb
Journal:  Biochemistry       Date:  1980-07-22       Impact factor: 3.162

8.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

9.  A role of the putidaredoxin COOH-terminus in P-450cam (cytochrome m) hydroxylations.

Authors:  S G Sligar; P G Debrunner; J D Lipscomb; M J Namtvedt; I C Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

10.  Understanding the role of the essential Asp251 in cytochrome p450cam using site-directed mutagenesis, crystallography, and kinetic solvent isotope effect.

Authors:  M Vidakovic; S G Sligar; H Li; T L Poulos
Journal:  Biochemistry       Date:  1998-06-30       Impact factor: 3.162

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Authors:  F Peter Guengerich; Kevin D McCarty; Jesse G Chapman
Journal:  J Biol Chem       Date:  2020-12-24       Impact factor: 5.157

4.  Structural Dynamics of Cytochrome P450 3A4 in the Presence of Substrates and Cytochrome P450 Reductase.

Authors:  Julie Ducharme; Irina F Sevrioukova; Christopher J Thibodeaux; Karine Auclair
Journal:  Biochemistry       Date:  2021-07-01       Impact factor: 3.321

5.  Cu2+-based distance measurements by pulsed EPR provide distance constraints for DNA backbone conformations in solution.

Authors:  Shreya Ghosh; Matthew J Lawless; Hanna J Brubaker; Kevin Singewald; Michael R Kurpiewski; Linda Jen-Jacobson; Sunil Saxena
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

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