Literature DB >> 18001135

Alteration of P450 distal pocket solvent leads to impaired proton delivery and changes in heme geometry.

Thomas M Makris1, Konstanze von Koenig, Ilme Schlichting, Stephen G Sligar.   

Abstract

Distal pocket water molecules have been widely implicated in the delivery of protons required in O-O bond heterolysis in the P450 reaction cycle. Targeted dehydration of the cytochrome P450cam (CYP101) distal pocket through mutagenesis of a distal pocket glycine to either valine or threonine results in the alteration of spin state equilibria, and has dramatic consequences on the catalytic rate, coupling efficiency, and kinetic solvent isotope effect parameters, highlighting an important role of the active-site hydration level on P450 catalysis. Cryoradiolysis of the mutant CYP101 oxyferrous complexes further indicates a specific perturbation of proton-transfer events required for the transformation of ferric-peroxo to ferric-hydroperoxo states. Finally, crystallography of the 248Val and 248Thr mutants in both the ferric camphor bound resting state and ferric-cyano adducts shows both the alteration of hydrogen-bonding networks and the alteration of heme geometry parameters. Taken together, these results indicate that the distal pocket microenvironment governs the transformation of reactive heme-oxygen intermediates in P450 cytochromes.

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Year:  2007        PMID: 18001135     DOI: 10.1021/bi7013695

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  25 in total

Review 1.  Conformational plasticity and structure/function relationships in cytochromes P450.

Authors:  Thomas C Pochapsky; Sophia Kazanis; Marina Dang
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

Review 2.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

Review 3.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

4.  Temperature derivative spectroscopy to monitor the autoxidation decay of cytochromes P450.

Authors:  Abhinav Luthra; Ilia G Denisov; Stephen G Sligar
Journal:  Anal Chem       Date:  2011-06-14       Impact factor: 6.986

5.  Toward a systems approach to the human cytochrome P450 ensemble: interactions between CYP2D6 and CYP2E1 and their functional consequences.

Authors:  Dmitri R Davydov; Nadezhda Y Davydova; John T Rodgers; Thomas H Rushmore; Jeffrey P Jones
Journal:  Biochem J       Date:  2017-10-10       Impact factor: 3.857

6.  Human Cytochrome CYP17A1: The Structural Basis for Compromised Lyase Activity with 17-Hydroxyprogesterone.

Authors:  Piotr J Mak; Ruchia Duggal; Ilia G Denisov; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2018-06-05       Impact factor: 15.419

7.  Selectivity-Determining Steps in O2 Reduction Catalyzed by Iron(tetramesitylporphyrin).

Authors:  Anna C Brezny; Samantha I Johnson; Simone Raugei; James M Mayer
Journal:  J Am Chem Soc       Date:  2020-02-20       Impact factor: 15.419

Review 8.  New cytochrome P450 mechanisms: implications for understanding molecular basis for drug toxicity at the level of the cytochrome.

Authors:  Narasimhulu Shakunthala
Journal:  Expert Opin Drug Metab Toxicol       Date:  2010-01       Impact factor: 4.481

Review 9.  Hydrocarbon hydroxylation by cytochrome P450 enzymes.

Authors:  Paul R Ortiz de Montellano
Journal:  Chem Rev       Date:  2010-02-10       Impact factor: 60.622

10.  Disruption of the proton relay network in the class 2 dihydroorotate dehydrogenase from Escherichia coli.

Authors:  Rebecca L Kow; Jonathan R Whicher; Claudia A McDonald; Bruce A Palfey; Rebecca L Fagan
Journal:  Biochemistry       Date:  2009-10-20       Impact factor: 3.162

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