Literature DB >> 23856057

Radical mediated ring formation in the biosynthesis of the hypermodified tRNA base wybutosine.

Anthony P Young1, Vahe Bandarian.   

Abstract

Wyosine and its derivatives are highly modified, acid labile tricyclic bases found at position 37 of tRNA(Phe) in archaea and eukarya. The formation of the common 4-demethylwyosine structural feature entails condensation of pyruvate and N-methylguanosine catalyzed by TYW1. This review will focus on the mechanism of this complex radical mediated transformation.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID： 23856057      PMCID： PMC4320972          DOI： 10.1016/j.cbpa.2013.05.035

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN： 1367-5931            Impact factor:   8.822


  36 in total

1.  Binding of 5'-GTP to the C-terminal FeS cluster of the radical S-adenosylmethionine enzyme MoaA provides insights into its mechanism.

Authors:  Petra Hänzelmann; Hermann Schindelin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

2.  Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA.

Authors:  Akiko Noma; Yohei Kirino; Yoshiho Ikeuchi; Tsutomu Suzuki
Journal:  EMBO J       Date:  2006-04-27       Impact factor: 11.598

Review 3.  The Radical SAM Superfamily.

Authors:  Perry A Frey; Adrian D Hegeman; Frank J Ruzicka
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Jan-Feb       Impact factor: 8.250

Review 4.  Control of radical chemistry in the AdoMet radical enzymes.

Authors:  Kaitlin S Duschene; Susan E Veneziano; Sunshine C Silver; Joan B Broderick
Journal:  Curr Opin Chem Biol       Date:  2009-03-09       Impact factor: 8.822

Review 5.  tRNA's modifications bring order to gene expression.

Authors:  Estella M Gustilo; Franck Ap Vendeix; Paul F Agris
Journal:  Curr Opin Microbiol       Date:  2008-04-02       Impact factor: 7.934

6.  Biotin synthase mechanism: on the origin of sulphur.

Authors:  B T Bui; D Florentin; F Fournier; O Ploux; A Méjean; A Marquet
Journal:  FEBS Lett       Date:  1998-11-27       Impact factor: 4.124

7.  Discovery of a gene family critical to wyosine base formation in a subset of phenylalanine-specific transfer RNAs.

Authors:  William F Waas; Valérie de Crécy-Lagard; Paul Schimmel
Journal:  J Biol Chem       Date:  2005-09-13       Impact factor: 5.157

8.  Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA.

Authors:  Yoko Suzuki; Akiko Noma; Tsutomu Suzuki; Miki Senda; Toshiya Senda; Ryuichiro Ishitani; Osamu Nureki
Journal:  J Mol Biol       Date:  2007-07-26       Impact factor: 5.469

9.  Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis.

Authors:  Sakurako Goto-Ito; Ryohei Ishii; Takuhiro Ito; Rie Shibata; Emiko Fusatomi; Shun Ichi Sekine; Yoshitaka Bessho; Shigeyuki Yokoyama
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-09-19

10.  In vitro characterization of AtsB, a radical SAM formylglycine-generating enzyme that contains three [4Fe-4S] clusters.

Authors:  Tyler L Grove; Kyung-Hoon Lee; Jennifer St Clair; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2008-06-18       Impact factor: 3.162
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  14 in total

Review 1.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

Review 2.  Radical S-adenosylmethionine enzymes.

Authors:  Joan B Broderick; Benjamin R Duffus; Kaitlin S Duschene; Eric M Shepard
Journal:  Chem Rev       Date:  2014-01-29       Impact factor: 60.622

Review 3.  Wybutosine biosynthesis: structural and mechanistic overview.

Authors:  Phanélie Perche-Letuvée; Thibaut Molle; Farhad Forouhar; Etienne Mulliez; Mohamed Atta
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 4.  Protein folding and tRNA biology.

Authors:  Mónica Marín; Tamara Fernández-Calero; Ricardo Ehrlich
Journal:  Biophys Rev       Date:  2017-09-24

5.  Mechanistic Studies of the Radical S-Adenosyl-L-methionine Enzyme 4-Demethylwyosine Synthase Reveal the Site of Hydrogen Atom Abstraction.

Authors:  Anthony P Young; Vahe Bandarian
Journal:  Biochemistry       Date:  2015-06-08       Impact factor: 3.162

6.  Does Viperin Function as a Radical S-Adenosyl-l-methionine-dependent Enzyme in Regulating Farnesylpyrophosphate Synthase Expression and Activity?

Authors:  Caitlyn Makins; Soumi Ghosh; Gabriel D Román-Meléndez; Paige A Malec; Robert T Kennedy; E Neil G Marsh
Journal:  J Biol Chem       Date:  2016-11-10       Impact factor: 5.157

Review 7.  Roles of Fe-S proteins: from cofactor synthesis to iron homeostasis to protein synthesis.

Authors:  Debkumar Pain; Andrew Dancis
Journal:  Curr Opin Genet Dev       Date:  2016-04-07       Impact factor: 5.578

8.  Biochemical and Spectroscopic Studies of Epoxyqueuosine Reductase: A Novel Iron-Sulfur Cluster- and Cobalamin-Containing Protein Involved in the Biosynthesis of Queuosine.

Authors:  Zachary D Miles; William K Myers; William M Kincannon; R David Britt; Vahe Bandarian
Journal:  Biochemistry       Date:  2015-07-31       Impact factor: 3.162

Review 9.  Biosynthesis of wyosine derivatives in tRNA(Phe) of Archaea: role of a remarkable bifunctional tRNA(Phe):m1G/imG2 methyltransferase.

Authors:  Jaunius Urbonavičius; Rolandas Meškys; Henri Grosjean
Journal:  RNA       Date:  2014-06       Impact factor: 4.942

Review 10.  Recent advances in radical SAM enzymology: new structures and mechanisms.

Authors:  Jiarui Wang; Rory P Woldring; Gabriel D Román-Meléndez; Alan M McClain; Brian R Alzua; E Neil G Marsh
Journal:  ACS Chem Biol       Date:  2014-07-16       Impact factor: 5.100
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