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Literature DB >> 25629788

Wybutosine biosynthesis: structural and mechanistic overview.

Phanélie Perche-Letuvée¹, Thibaut Molle, Farhad Forouhar, Etienne Mulliez, Mohamed Atta.

Abstract

Over the last 10 years, significant progress has been made in understanding the genetics, enzymology and structural components of the wybutosine (yW) biosynthetic pathway. These studies have played a key role in expanding our understanding of yW biosynthesis and have revealed unexpected evolutionary ties, which are presently being unraveled. The enzymes catalyzing the 5 steps of this pathway, from genetically encoded guanosine to wybutosine base, provide an ensemble of amazing reaction mechanisms that are to be discussed in this review article.

Entities: Chemical

Keywords: Fe-S clusters; Radical-SAM enzymes; S-adenosylmethionine; Wybutosine; tRNA modification

Mesh：

Substances：

Year: 2014 PMID： 25629788 PMCID： PMC4615248 DOI： 10.4161/15476286.2014.992271

Source DB: PubMed Journal: RNA Biol ISSN： 1547-6286 Impact factor: 4.652

47 in total

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Journal: Wiley Interdiscip Rev RNA Date: 2011-03-23 Impact factor: 9.957

4. Two Fe-S clusters catalyze sulfur insertion by radical-SAM methylthiotransferases.

Authors: Farhad Forouhar; Simon Arragain; Mohamed Atta; Serge Gambarelli; Jean-Marie Mouesca; Munif Hussain; Rong Xiao; Sylvie Kieffer-Jaquinod; Jayaraman Seetharaman; Thomas B Acton; Gaetano T Montelione; Etienne Mulliez; John F Hunt; Marc Fontecave
Journal: Nat Chem Biol Date: 2013-03-31 Impact factor: 15.040

5. Expanding role of the jumonji C domain as an RNA hydroxylase.

Authors: Akiko Noma; Ryuichiro Ishitani; Megumi Kato; Asuteka Nagao; Osamu Nureki; Tsutomu Suzuki
Journal: J Biol Chem Date: 2010-08-25 Impact factor: 5.157

Review 6. Radical mediated ring formation in the biosynthesis of the hypermodified tRNA base wybutosine.

Authors: Anthony P Young; Vahe Bandarian
Journal: Curr Opin Chem Biol Date: 2013-07-12 Impact factor: 8.822

7. Crystal structure of archaeal tRNA(m(1)G37)methyltransferase aTrm5.

Authors: Sakurako Goto-Ito; Takuhiro Ito; Ryohei Ishii; Yutaka Muto; Yoshitaka Bessho; Shigeyuki Yokoyama
Journal: Proteins Date: 2008-09

8. Identification of a novel pyridoxal 5'-phosphate binding site in adenosylcobalamin-dependent lysine 5,6-aminomutase from Porphyromonas gingivalis.

Authors: Kuo-Hsiang Tang; Amy Harms; Perry A Frey
Journal: Biochemistry Date: 2002-07-09 Impact factor: 3.162

9. Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon.

Authors: Sarin Chimnaronk; Farhad Forouhar; Junichi Sakai; Min Yao; Cecile M Tron; Mohamed Atta; Marc Fontecave; John F Hunt; Isao Tanaka
Journal: Biochemistry Date: 2009-06-16 Impact factor: 3.162

10. Conservation of structure and mechanism by Trm5 enzymes.

Authors: Thomas Christian; Howard Gamper; Ya-Ming Hou
Journal: RNA Date: 2013-07-25 Impact factor: 4.942

18 in total

Review 1. Recent Advances in Enzymatic Complexity Generation: Cyclization Reactions.

Authors: Christopher T Walsh; Yi Tang
Journal: Biochemistry Date: 2017-12-20 Impact factor: 3.162

2. Mechanistic Studies of the Radical S-Adenosyl-L-methionine Enzyme 4-Demethylwyosine Synthase Reveal the Site of Hydrogen Atom Abstraction.

Authors: Anthony P Young; Vahe Bandarian
Journal: Biochemistry Date: 2015-06-08 Impact factor: 3.162

Review 3. How the intracellular partitioning of tRNA and tRNA modification enzymes affects mitochondrial function.

Authors: Zdeněk Paris; Juan D Alfonzo
Journal: IUBMB Life Date: 2018-10-25 Impact factor: 3.885

Review 4. The occurrence order and cross-talk of different tRNA modifications.

Authors: Jing Li; Wen-Yu Zhu; Wen-Qing Yang; Cai-Tao Li; Ru-Juan Liu
Journal: Sci China Life Sci Date: 2021-04-19 Impact factor: 6.038

Review 5. Modifications of the human tRNA anticodon loop and their associations with genetic diseases.

Authors: Jing-Bo Zhou; En-Duo Wang; Xiao-Long Zhou
Journal: Cell Mol Life Sci Date: 2021-10-04 Impact factor: 9.261

Review 6. From Prebiotics to Probiotics: The Evolution and Functions of tRNA Modifications.

Authors: Katherine M McKenney; Juan D Alfonzo
Journal: Life (Basel) Date: 2016-03-14

Review 7. The modified base isopentenyladenosine and its derivatives in tRNA.

Authors: Ulrich Schweizer; Simon Bohleber; Noelia Fradejas-Villar
Journal: RNA Biol Date: 2017-02-17 Impact factor: 4.652

Review 8. On the Role of Additional [4Fe-4S] Clusters with a Free Coordination Site in Radical-SAM Enzymes.

Authors: Etienne Mulliez; Victor Duarte; Simon Arragain; Marc Fontecave; Mohamed Atta
Journal: Front Chem Date: 2017-03-16 Impact factor: 5.221

9. Biochemical and Structural Characterization of a Schiff Base in the Radical-Mediated Biosynthesis of 4-Demethylwyosine by TYW1.

Authors: Tsehai A J Grell; Anthony P Young; Catherine L Drennan; Vahe Bandarian
Journal: J Am Chem Soc Date: 2018-05-24 Impact factor: 15.419

10. Mapping the mammalian ribosome quality control complex interactome using proximity labeling approaches.

Authors: Nathan Zuzow; Arit Ghosh; Marilyn Leonard; Jeffrey Liao; Bing Yang; Eric J Bennett
Journal: Mol Biol Cell Date: 2018-03-22 Impact factor: 4.138