Literature DB >> 23852576

Zaccai neutron resilience and site-specific hydration dynamics in a globular protein.

Yinglong Miao1, Liang Hong, Zheng Yi, Jeremy C Smith.   

Abstract

A discussion is presented of contributions of the Zaccai group to the understanding of flexibility in biological macromolecules using dynamic neutron scattering. The concept of resilience as introduced by Zaccai is discussed and investigated using molecular dynamics simulation on camphor-bound cytochrome P450. The resilience of hydrophilic residues is found to be more strongly affected by hydration than that of hydrophobic counterparts. The hydration-induced softening of protein propagates from the surface into the dry core. Moreover, buried hydrophilic residues behave more like those exposed on the protein surface, and are different from their hydrophobic counterparts.

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Year:  2013        PMID: 23852576     DOI: 10.1140/epje/i2013-13072-5

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  24 in total

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Authors:  G Zaccai
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

2.  Derivation of mean-square displacements for protein dynamics from elastic incoherent neutron scattering.

Authors:  Zheng Yi; Yinglong Miao; Jerome Baudry; Nitin Jain; Jeremy C Smith
Journal:  J Phys Chem B       Date:  2012-04-13       Impact factor: 2.991

3.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

4.  Hydration dependence of active core fluctuations in bacteriorhodopsin.

Authors:  Kathleen Wood; Ursula Lehnert; Brigitte Kessler; Giuseppe Zaccai; Dieter Oesterhelt
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

5.  Temperature-dependent dynamical transitions of different classes of amino acid residue in a globular protein.

Authors:  Yinglong Miao; Zheng Yi; Dennis C Glass; Liang Hong; Madhusudan Tyagi; Jerome Baudry; Nitin Jain; Jeremy C Smith
Journal:  J Am Chem Soc       Date:  2012-11-20       Impact factor: 15.419

6.  Surface hydration amplifies single-well protein atom diffusion propagating into the macromolecular core.

Authors:  Liang Hong; Xiaolin Cheng; Dennis C Glass; Jeremy C Smith
Journal:  Phys Rev Lett       Date:  2012-06-05       Impact factor: 9.161

7.  Dynamics of different functional parts of bacteriorhodopsin: H-2H labeling and neutron scattering.

Authors:  V Réat; H Patzelt; M Ferrand; C Pfister; D Oesterhelt; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

8.  Direct measurement of hydration-related dynamic changes in lysozyme using inelastic neutron scattering spectroscopy.

Authors:  J Smith; S Cusack; P Poole; J Finney
Journal:  J Biomol Struct Dyn       Date:  1987-02

9.  Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering.

Authors:  M Ferrand; A J Dianoux; W Petry; G Zaccaï
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

10.  Inelastic neutron scattering analysis of hexokinase dynamics and its modification on binding of glucose.

Authors:  B Jacrot; S Cusack; A J Dianoux; D M Engelman
Journal:  Nature       Date:  1982-11-04       Impact factor: 49.962

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  3 in total

1.  Editorial on the topical issue "neutron biological physics".

Authors:  Giovanna Fragneto; Frank Gabel
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-30       Impact factor: 1.890

2.  Dynamics of the Peripheral Membrane Protein P2 from Human Myelin Measured by Neutron Scattering--A Comparison between Wild-Type Protein and a Hinge Mutant.

Authors:  Saara Laulumaa; Tuomo Nieminen; Mari Lehtimäki; Shweta Aggarwal; Mikael Simons; Michael M Koza; Ilpo Vattulainen; Petri Kursula; Francesca Natali
Journal:  PLoS One       Date:  2015-06-11       Impact factor: 3.240

3.  General trends of dihedral conformational transitions in a globular protein.

Authors:  Yinglong Miao; Jerome Baudry; Jeremy C Smith; J Andrew McCammon
Journal:  Proteins       Date:  2016-02-15
  3 in total

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