Literature DB >> 8415760

Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering.

M Ferrand1, A J Dianoux, W Petry, G Zaccaï.   

Abstract

The internal dynamics of bacteriorhodopsin, the light-driven proton pump in the purple membrane of Halobacterium halobium, has been studied by inelastic neutron scattering for various conditions of temperature and hydration. Light activation can take place when the membrane is vibrating harmonically. The ability of the protein to functionally relax and complete the photocycle initiated by the absorption of a photon, however, is strongly correlated with the onset of low-frequency, large-amplitude anharmonic atomic motions in the membrane. For a normally hydrated sample, this occurs at about 230 K, where a dynamical transition from a low-temperature harmonic regime is observed. In moderately dry samples, on the other hand, in which the photocycle is slowed down by several orders of magnitude, no transition is observed and protein motions remain approximately harmonic up to room temperature. These results support the hypothesis, made from previous neutron diffraction studies, that the "softness" of the membrane modulates the function of bacteriorhodopsin by allowing or not allowing large-amplitude motions in the protein.

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Year:  1993        PMID: 8415760      PMCID: PMC47631          DOI: 10.1073/pnas.90.20.9668

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

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Authors:  R H Lozier; R A Bogomolni; W Stoeckenius
Journal:  Biophys J       Date:  1975-09       Impact factor: 4.033

2.  Dynamics of myoglobin: comparison of simulation results with neutron scattering spectra.

Authors:  J Smith; K Kuczera; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

Review 3.  The structure of bacteriorhodopsin and its relevance to the visual opsins and other seven-helix G-protein coupled receptors.

Authors:  R Henderson; G F Schertler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1990-01-30       Impact factor: 6.237

4.  Tertiary structure of bacteriorhodopsin. Positions and orientations of helices A and B in the structural map determined by neutron diffraction.

Authors:  J L Popot; D M Engelman; O Gurel; G Zaccaï
Journal:  J Mol Biol       Date:  1989-12-20       Impact factor: 5.469

5.  Structural changes in bacteriorhodopsin during proton translocation revealed by neutron diffraction.

Authors:  N A Dencher; D Dresselhaus; G Zaccai; G Büldt
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

Review 6.  Conformational substates in proteins.

Authors:  H Frauenfelder; F Parak; R D Young
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

7.  Structure and polymorphism of the hydrocarbon chains of lipids: a study of lecithin-water phases.

Authors:  A Tardieu; V Luzzati; F C Reman
Journal:  J Mol Biol       Date:  1973-04-25       Impact factor: 5.469

8.  Dynamical transition of myoglobin revealed by inelastic neutron scattering.

Authors:  W Doster; S Cusack; W Petry
Journal:  Nature       Date:  1989-02-23       Impact factor: 49.962

9.  Structure and hydration of purple membranes in different conditions.

Authors:  G Zaccai
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

10.  Electron diffraction analysis of structural changes in the photocycle of bacteriorhodopsin.

Authors:  S Subramaniam; M Gerstein; D Oesterhelt; R Henderson
Journal:  EMBO J       Date:  1993-01       Impact factor: 11.598

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  100 in total

1.  Evolution of the internal dynamics of two globular proteins from dry powder to solution.

Authors:  J Pérez; J M Zanotti; D Durand
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

2.  Enzyme activity and dynamics: xylanase activity in the absence of fast anharmonic dynamics.

Authors:  R V Dunn; V Réat; J Finney; M Ferrand; J C Smith; R M Daniel
Journal:  Biochem J       Date:  2000-03-01       Impact factor: 3.857

3.  Protein flexibility from the dynamical transition: a force constant analysis.

Authors:  D J Bicout; G Zaccai
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

4.  Simulation analysis of the retinal conformational equilibrium in dark-adapted bacteriorhodopsin.

Authors:  J Baudry; S Crouzy; B Roux; J C Smith
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

5.  The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments.

Authors:  M Tarek; D J Tobias
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

6.  Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

7.  Radially softening diffusive motions in a globular protein.

Authors:  S Dellerue; A J Petrescu; J C Smith; M C Bellissent-Funel
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

8.  Temperature dependence of protein dynamics: computer simulation analysis of neutron scattering properties.

Authors:  Jennifer A Hayward; Jeremy C Smith
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

9.  Specific protein dynamics near the solvent glass transition assayed by radiation-induced structural changes.

Authors:  M Weik; R B Ravelli; I Silman; J L Sussman; P Gros; J Kroon
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

10.  On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

Authors:  M M Teeter; A Yamano; B Stec; U Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

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