Literature DB >> 18339747

Hydration dependence of active core fluctuations in bacteriorhodopsin.

Kathleen Wood1, Ursula Lehnert, Brigitte Kessler, Giuseppe Zaccai, Dieter Oesterhelt.   

Abstract

We used neutron scattering and specific hydrogen-deuterium labeling to investigate the thermal dynamics of isotope-labeled amino acids and retinal, predominantly in the active core and extracellular moiety of bacteriorhodopsin (BR) in the purple membrane and the dynamical response to hydration. Measurements on two neutron spectrometers allowed two populations of motions to be characterized. The lower amplitude motions were found to be the same for both the labeled amino acids and retinal of BR and the global membrane. The larger amplitude dynamics of the labeled part, however, were found to be more resilient than the average membrane, suggesting their functional importance. The response to hydration was characterized, showing that the labeled part of BR is not shielded from hydration effects. The results suggest that the inhibition of high-amplitude motions by lowering hydration may play a key role in the slowing down of the photocycle and the proton pumping activity of BR.

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Year:  2008        PMID: 18339747      PMCID: PMC2426655          DOI: 10.1529/biophysj.107.120386

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  55 in total

1.  Pathways of proton release in the bacteriorhodopsin photocycle.

Authors:  L Zimányi; G Váró; M Chang; B Ni; R Needleman; J K Lanyi
Journal:  Biochemistry       Date:  1992-09-15       Impact factor: 3.162

2.  Internal molecular motions of bacteriorhodopsin: hydration-induced flexibility studied by quasielastic incoherent neutron scattering using oriented purple membranes.

Authors:  J Fitter; R E Lechner; G Buldt; N A Dencher
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

3.  Picosecond molecular motions in bacteriorhodopsin from neutron scattering.

Authors:  J Fitter; R E Lechner; N A Dencher
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

4.  Ultraviolet resonance Raman spectra of Trp-182 and Trp-189 in bacteriorhodopsin: novel information on the structure of Trp-182 and its steric interaction with retinal.

Authors:  S Hashimoto; K Obata; H Takeuchi; R Needleman; J K Lanyi
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

5.  Structure and fluctuations of bacteriorhodopsin in the purple membrane: a molecular dynamics study.

Authors:  O Edholm; O Berger; F Jähnig
Journal:  J Mol Biol       Date:  1995-06-30       Impact factor: 5.469

6.  Force-induced conformational change of bacteriorhodopsin.

Authors:  D J Müller; G Büldt; A Engel
Journal:  J Mol Biol       Date:  1995-06-02       Impact factor: 5.469

7.  Interaction of tryptophan-182 with the retinal 9-methyl group in the L intermediate of bacteriorhodopsin.

Authors:  Y Yamazaki; J Sasaki; M Hatanaka; H Kandori; A Maeda; R Needleman; T Shinada; K Yoshihara; L S Brown; J K Lanyi
Journal:  Biochemistry       Date:  1995-01-17       Impact factor: 3.162

8.  Hydrophobic amino acids in the retinal-binding pocket of bacteriorhodopsin.

Authors:  D A Greenhalgh; D L Farrens; S Subramaniam; H G Khorana
Journal:  J Biol Chem       Date:  1993-09-25       Impact factor: 5.157

9.  Liquid-like side-chain dynamics in myoglobin.

Authors:  G R Kneller; J C Smith
Journal:  J Mol Biol       Date:  1994-09-23       Impact factor: 5.469

10.  Electron-crystallographic refinement of the structure of bacteriorhodopsin.

Authors:  N Grigorieff; T A Ceska; K H Downing; J M Baldwin; R Henderson
Journal:  J Mol Biol       Date:  1996-06-14       Impact factor: 5.469

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  6 in total

1.  Zaccai neutron resilience and site-specific hydration dynamics in a globular protein.

Authors:  Yinglong Miao; Liang Hong; Zheng Yi; Jeremy C Smith
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

2.  From powder to solution: hydration dependence of human hemoglobin dynamics correlated to body temperature.

Authors:  A M Stadler; I Digel; J P Embs; T Unruh; M Tehei; G Zaccai; G Büldt; G M Artmann
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

3.  Solvent-Driven Dynamical Crossover in the Phenylalanine Side-Chain from the Hydrophobic Core of Amyloid Fibrils Detected by 2H NMR Relaxation.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Gina L Hoatson; Wei Qiang; Isaac B Falconer
Journal:  J Phys Chem B       Date:  2017-07-21       Impact factor: 2.991

4.  The observation of evolutionary interaction pattern pairs in membrane proteins.

Authors:  Steffen Grunert; Dirk Labudde
Journal:  BMC Struct Biol       Date:  2015-03-24

5.  The fluctuating ribosome: thermal molecular dynamics characterized by neutron scattering.

Authors:  Giuseppe Zaccai; Francesca Natali; Judith Peters; Martina Řihová; Ella Zimmerman; J Ollivier; J Combet; Marie-Christine Maurel; Anat Bashan; Ada Yonath
Journal:  Sci Rep       Date:  2016-11-16       Impact factor: 4.379

6.  Thermodynamics of lipid multi-lamellar vesicles in presence of sterols at high hydrostatic pressure.

Authors:  J Peters; J Marion; F J Becher; M Trapp; T Gutberlet; D J Bicout; T Heimburg
Journal:  Sci Rep       Date:  2017-11-10       Impact factor: 4.379

  6 in total

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