Literature DB >> 22471396

Derivation of mean-square displacements for protein dynamics from elastic incoherent neutron scattering.

Zheng Yi1, Yinglong Miao, Jerome Baudry, Nitin Jain, Jeremy C Smith.   

Abstract

The derivation of mean-square displacements from elastic incoherent neutron scattering (EINS) of proteins is examined, with the aid of experiments on camphor-bound cytochrome P450cam and complementary molecular dynamics simulations. It is shown that a q(4) correction to the elastic incoherent structure factor (where q is the scattering vector) can be simply used to reliably estimate from the experiment both the average mean-square atomic displacement, <Δr(2)> of the nonexchanged hydrogen atoms in the protein and its variance, σ(2). The molecular dynamics simulation results are in broad agreement with the experimentally derived <Δr(2)> and σ(2) derived from EINS on instruments at two different energy resolutions, corresponding to dynamics on the ∼100 ps and ∼1 ns time scales. Significant dynamical heterogeneity is found to arise from methyl-group rotations. The easy-to-apply q(4) correction extends the information extracted from elastic incoherent neutron scattering experiments and should be of wide applicability.

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Year:  2012        PMID: 22471396     DOI: 10.1021/jp2102868

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  11 in total

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Journal:  Biophys J       Date:  2021-02-03       Impact factor: 4.033

9.  Dynamical Transitions and Diffusion Mechanism in DODAB Bilayer.

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10.  General trends of dihedral conformational transitions in a globular protein.

Authors:  Yinglong Miao; Jerome Baudry; Jeremy C Smith; J Andrew McCammon
Journal:  Proteins       Date:  2016-02-15
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