Literature DB >> 23003993

Surface hydration amplifies single-well protein atom diffusion propagating into the macromolecular core.

Liang Hong1, Xiaolin Cheng, Dennis C Glass, Jeremy C Smith.   

Abstract

The effect of surface hydration water on internal protein motion is of fundamental interest in molecular biophysics. Here, by decomposing the picosecond to nanosecond atomic motion in molecular dynamics simulations of lysozyme at different hydration levels into three components--localized single-well diffusion, methyl group rotation, and nonmethyl jumps--we show that the effect of surface hydration is mainly to increase the volume of the localized single-well diffusion. These diffusive motions are coupled in such a way that the hydration effect propagates from the protein surface into the dry core.

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Year:  2012        PMID: 23003993     DOI: 10.1103/PhysRevLett.108.238102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Zaccai neutron resilience and site-specific hydration dynamics in a globular protein.

Authors:  Yinglong Miao; Liang Hong; Zheng Yi; Jeremy C Smith
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

2.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

3.  Dynamics of protein and its hydration water: neutron scattering studies on fully deuterated GFP.

Authors:  Jonathan D Nickels; Hugh O'Neill; Liang Hong; Madhusudan Tyagi; Georg Ehlers; Kevin L Weiss; Qiu Zhang; Zheng Yi; Eugene Mamontov; Jeremy C Smith; Alexei P Sokolov
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

4.  Flexibility and Solvation of Amyloid-β Hydrophobic Core.

Authors:  Liliya Vugmeyster; Matthew A Clark; Isaac B Falconer; Dmitry Ostrovsky; Donald Gantz; Wei Qiang; Gina L Hoatson
Journal:  J Biol Chem       Date:  2016-07-11       Impact factor: 5.157

Review 5.  Static solid-state 2H NMR methods in studies of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-03-14       Impact factor: 9.795

6.  Solvent-Driven Dynamical Crossover in the Phenylalanine Side-Chain from the Hydrophobic Core of Amyloid Fibrils Detected by 2H NMR Relaxation.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Gina L Hoatson; Wei Qiang; Isaac B Falconer
Journal:  J Phys Chem B       Date:  2017-07-21       Impact factor: 2.991

7.  Dynamics of Hydrophobic Core Phenylalanine Residues Probed by Solid-State Deuteron NMR.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Toni Villafranca; Janelle Sharp; Wei Xu; Andrew S Lipton; Gina L Hoatson; Robert L Vold
Journal:  J Phys Chem B       Date:  2015-11-12       Impact factor: 2.991

8.  Comparative Study of the Collective Dynamics of Proteins and Inorganic Nanoparticles.

Authors:  Esmael J Haddadian; Hao Zhang; Karl F Freed; Jack F Douglas
Journal:  Sci Rep       Date:  2017-02-08       Impact factor: 4.379

9.  Determination of functional collective motions in a protein at atomic resolution using coherent neutron scattering.

Authors:  Liang Hong; Nitin Jain; Xiaolin Cheng; Ana Bernal; Madhusudan Tyagi; Jeremy C Smith
Journal:  Sci Adv       Date:  2016-10-14       Impact factor: 14.136

  9 in total

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