Literature DB >> 23140218

Temperature-dependent dynamical transitions of different classes of amino acid residue in a globular protein.

Yinglong Miao1, Zheng Yi, Dennis C Glass, Liang Hong, Madhusudan Tyagi, Jerome Baudry, Nitin Jain, Jeremy C Smith.   

Abstract

The temperature dependences of the nanosecond dynamics of different chemical classes of amino acid residue have been analyzed by combining elastic incoherent neutron scattering experiments with molecular dynamics simulations on cytochrome P450cam. At T = 100-160 K, anharmonic motion in hydrophobic and aromatic residues is activated, whereas hydrophilic residue motions are suppressed because of hydrogen-bonding interactions. In contrast, at T = 180-220 K, water-activated jumps of hydrophilic side chains, which are strongly coupled to the relaxation rates of the hydrogen bonds they form with hydration water, become apparent. Thus, with increasing temperature, first the hydrophobic core awakens, followed by the hydrophilic surface.

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Year:  2012        PMID: 23140218     DOI: 10.1021/ja3097898

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

1.  Zaccai neutron resilience and site-specific hydration dynamics in a globular protein.

Authors:  Yinglong Miao; Liang Hong; Zheng Yi; Jeremy C Smith
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

2.  Comparative Dynamics of Methionine Side-Chain in FMOC-Methionine and in Amyloid Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Chem Phys Lett       Date:  2017-02-14       Impact factor: 2.328

3.  Moving in the Right Direction: Protein Vibrations Steering Function.

Authors:  Katherine A Niessen; Mengyang Xu; Alessandro Paciaroni; Andrea Orecchini; Edward H Snell; Andrea G Markelz
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

4.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

Review 5.  Static solid-state 2H NMR methods in studies of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-03-14       Impact factor: 9.795

6.  Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins.

Authors:  Derya Vural; Jeremy C Smith; Henry R Glyde
Journal:  Biophys J       Date:  2018-03-24       Impact factor: 4.033

7.  Solvent-Driven Dynamical Crossover in the Phenylalanine Side-Chain from the Hydrophobic Core of Amyloid Fibrils Detected by 2H NMR Relaxation.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Gina L Hoatson; Wei Qiang; Isaac B Falconer
Journal:  J Phys Chem B       Date:  2017-07-21       Impact factor: 2.991

Review 8.  You are lost without a map: Navigating the sea of protein structures.

Authors:  Audrey L Lamb; T Joseph Kappock; Nicholas R Silvaggi
Journal:  Biochim Biophys Acta       Date:  2014-12-29

9.  Unconstrained Enhanced Sampling for Free Energy Calculations of Biomolecules: A Review.

Authors:  Yinglong Miao; J Andrew McCammon
Journal:  Mol Simul       Date:  2016-07-05       Impact factor: 2.178

10.  Mesodomain and Protein-Associated Solvent Phases with Temperature-Tunable (200-265 K) Dynamics Surround Ethanolamine Ammonia-Lyase in Globally Polycrystalline Aqueous Solution Containing Dimethyl Sulfoxide.

Authors:  Benjamen Nforneh; Kurt Warncke
Journal:  J Phys Chem B       Date:  2017-12-01       Impact factor: 2.991

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