Literature DB >> 24231385

Surface modification of graphene nanopores for protein translocation.

Y P Shan1, P B Tiwari, P Krishnakumar, I Vlassiouk, W Z Li, X W Wang, Y Darici, S M Lindsay, H D Wang, S Smirnov, J He.   

Abstract

Studies of DNA translocation through graphene nanopores have revealed their potential for DNA sequencing. Here we report a study of protein translocation through chemically modified graphene nanopores. A transmission electron microscope (TEM) was used to cut nanopores with diameters between 5 and 20 nm in multilayer graphene prepared by chemical vapor deposition (CVD). After oxygen plasma treatment, the dependence of the measured ionic current on salt concentration and pH was consistent with a small surface charge induced by the formation of carboxyl groups. While translocation of gold nanoparticles (10 nm) was readily detected through such treated pores of a larger diameter, translocation of the protein ferritin was not observed either for oxygen plasma treated pores, or for pores modified with mercaptohexadecanoic acid. Ferritin translocation events were reliably observed after the pores were modified with the phospholipid-PEG (DPPE-PEG750) amphiphile. The ion current signature of translocation events was complex, suggesting that a series of interactions between the protein and pores occurs during the process.

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Year:  2013        PMID: 24231385      PMCID: PMC3925770          DOI: 10.1088/0957-4484/24/49/495102

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  40 in total

1.  Detection of nucleic acids with graphene nanopores: ab initio characterization of a novel sequencing device.

Authors:  Tammie Nelson; Bo Zhang; Oleg V Prezhdo
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

2.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

3.  DNA translocation through graphene nanopores.

Authors:  Grégory F Schneider; Stefan W Kowalczyk; Victor E Calado; Grégory Pandraud; Henny W Zandbergen; Lieven M K Vandersypen; Cees Dekker
Journal:  Nano Lett       Date:  2010-08-11       Impact factor: 11.189

4.  Fast DNA sequencing by electrical means inches closer.

Authors:  Massimiliano Di Ventra
Journal:  Nanotechnology       Date:  2013-07-30       Impact factor: 3.874

5.  Rapid sequencing of individual DNA molecules in graphene nanogaps.

Authors:  Henk W Ch Postma
Journal:  Nano Lett       Date:  2010-02-10       Impact factor: 11.189

Review 6.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

7.  Ionic selectivity of single nanochannels.

Authors:  Ivan Vlassiouk; Sergei Smirnov; Zuzanna Siwy
Journal:  Nano Lett       Date:  2008-06-18       Impact factor: 11.189

8.  Electrical characterization of protein molecules by a solid-state nanopore.

Authors:  Daniel Fologea; Bradley Ledden; David S McNabb; Jiali Li
Journal:  Appl Phys Lett       Date:  2007-07-31       Impact factor: 3.791

9.  Computational investigation of DNA detection using graphene nanopores.

Authors:  Chaitanya Sathe; Xueqing Zou; Jean-Pierre Leburton; Klaus Schulten
Journal:  ACS Nano       Date:  2011-10-13       Impact factor: 15.881

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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  10 in total

1.  Single-layer MoS2 nanopores as nanopower generators.

Authors:  Jiandong Feng; Michael Graf; Ke Liu; Dmitry Ovchinnikov; Dumitru Dumcenco; Mohammad Heiranian; Vishal Nandigana; Narayana R Aluru; Andras Kis; Aleksandra Radenovic
Journal:  Nature       Date:  2016-07-13       Impact factor: 49.962

2.  Graphene Nanopores for Protein Sequencing.

Authors:  James Wilson; Leila Sloman; Zhiren He; Aleksei Aksimentiev
Journal:  Adv Funct Mater       Date:  2016-06-09       Impact factor: 18.808

3.  Colloquium: Ionic phenomena in nanoscale pores through 2D materials.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Rev Mod Phys       Date:  2019       Impact factor: 54.494

4.  A graphene aptasensor for biomarker detection in human serum.

Authors:  Xuejun Wang; Yibo Zhu; Timothy R Olsen; Na Sun; Wenjun Zhang; Renjun Pei; Qiao Lin
Journal:  Electrochim Acta       Date:  2018-09-13       Impact factor: 6.901

5.  Step-defect guided delivery of DNA to a graphene nanopore.

Authors:  Manish Shankla; Aleksei Aksimentiev
Journal:  Nat Nanotechnol       Date:  2019-08-05       Impact factor: 39.213

6.  A surface plasmon resonance study of the intermolecular interaction between Escherichia coli topoisomerase I and pBAD/Thio supercoiled plasmid DNA.

Authors:  Purushottam Babu Tiwari; Thirunavukkarasu Annamalai; Bokun Cheng; Gagandeep Narula; Xuewen Wang; Yuk-Ching Tse-Dinh; Jin He; Yesim Darici
Journal:  Biochem Biophys Res Commun       Date:  2014-02-12       Impact factor: 3.575

7.  Selectively Sized Graphene-Based Nanopores for in Situ Single Molecule Sensing.

Authors:  Colin R Crick; Jasmine Y Y Sze; Martin Rosillo-Lopez; Christoph G Salzmann; Joshua B Edel
Journal:  ACS Appl Mater Interfaces       Date:  2015-08-04       Impact factor: 9.229

8.  Ion selectivity of graphene nanopores.

Authors:  Ryan C Rollings; Aaron T Kuan; Jene A Golovchenko
Journal:  Nat Commun       Date:  2016-04-22       Impact factor: 14.919

9.  Hydrogen Peroxide Sensing Based on Inner Surfaces Modification of Solid-State Nanopore.

Authors:  Libo Zhu; Dejian Gu; Quanjun Liu
Journal:  Nanoscale Res Lett       Date:  2017-06-20       Impact factor: 4.703

10.  Multifunctional graphene heterogeneous nanochannel with voltage-tunable ion selectivity.

Authors:  Shihao Su; Yifan Zhang; Shengyuan Peng; Linxin Guo; Yong Liu; Engang Fu; Huijun Yao; Jinlong Du; Guanghua Du; Jianming Xue
Journal:  Nat Commun       Date:  2022-08-19       Impact factor: 17.694

  10 in total

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