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Literature DB >> 30480311

Displacement chemistry-based nanopore analysis of nucleic acids in complicated matrices.

Liang Wang¹, Xiaohan Chen, Shuo Zhou, Golbarg M Roozbahani, Youwen Zhang, Deqiang Wang, Xiyun Guan.

Abstract

To overcome the effect of other components of complicated biological samples on nanopore stochastic sensing, displacement chemical reaction was utilized to selectively extract the target nucleic acid from whole blood. Given its simplicity and high sensitivity for detecting nucleic acids, our developed displacement chemistry-based nanopore sensing strategy offers the potential for fieldable/point-of-care diagnostic applications.

Entities: Chemical Disease Mutation Species

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Year: 2018 PMID： 30480311 PMCID： PMC6800042 DOI： 10.1039/c8cc07944g

Source DB: PubMed Journal: Chem Commun (Camb) ISSN： 1359-7345 Impact factor: 6.222

32 in total

1. Nanopore-based electrical and label-free sensing of enzyme activity in blood serum.

Authors: Mikiembo Kukwikila; Stefan Howorka
Journal: Anal Chem Date: 2015-08-25 Impact factor: 6.986

2. Measuring a frequency spectrum for single-molecule interactions with a confined nanopore.

Authors: Shao-Chuang Liu; Meng-Xiao Li; Meng-Yin Li; Ya-Qian Wang; Yi-Lun Ying; Yong-Jing Wan; Yi-Tao Long
Journal: Faraday Discuss Date: 2018-10-01 Impact factor: 4.008

3. Unzipping of Double-stranded DNA in Engineered α-Hemolysin Pores.

Authors: Aihua Liu; Qitao Zhao; D M Milan Krishantha; Xiyun Guan
Journal: J Phys Chem Lett Date: 2011-06-12 Impact factor: 6.475

4. Engineered nanopore of Phi29 DNA-packaging motor for real-time detection of single colon cancer specific antibody in serum.

Authors: Shaoying Wang; Farzin Haque; Piotr G Rychahou; B Mark Evers; Peixuan Guo
Journal: ACS Nano Date: 2013-10-30 Impact factor: 15.881

5. Slowing DNA Transport Using Graphene-DNA Interactions.

Authors: Shouvik Banerjee; James Wilson; Jiwook Shim; Manish Shankla; Elise A Corbin; Aleksei Aksimentiev; Rashid Bashir
Journal: Adv Funct Mater Date: 2015-02-11 Impact factor: 18.808

6. Nanopore label-free detection of single-nucleotide deletion in Baxα/BaxΔ2.

Authors: Xiaohan Chen; Liang Wang; Golbarg M Roozbahani; Youwen Zhang; Jialing Xiang; Xiyun Guan
Journal: Electrophoresis Date: 2018-08-02 Impact factor: 3.535

7. DINAMelt web server for nucleic acid melting prediction.

Authors: Nicholas R Markham; Michael Zuker
Journal: Nucleic Acids Res Date: 2005-07-01 Impact factor: 16.971

8. Internal vs fishhook hairpin DNA: unzipping locations and mechanisms in the α-hemolysin nanopore.

Authors: Yun Ding; Aaron M Fleming; Henry S White; Cynthia J Burrows
Journal: J Phys Chem B Date: 2014-11-03 Impact factor: 2.991

9. Identification of single amino acid differences in uniformly charged homopolymeric peptides with aerolysin nanopore.

Authors: Fabien Piguet; Hadjer Ouldali; Manuela Pastoriza-Gallego; Philippe Manivet; Juan Pelta; Abdelghani Oukhaled
Journal: Nat Commun Date: 2018-03-06 Impact factor: 14.919

10. Decoding long nanopore sequencing reads of natural DNA.

Authors: Andrew H Laszlo; Ian M Derrington; Brian C Ross; Henry Brinkerhoff; Andrew Adey; Ian C Nova; Jonathan M Craig; Kyle W Langford; Jenny Mae Samson; Riza Daza; Kenji Doering; Jay Shendure; Jens H Gundlach
Journal: Nat Biotechnol Date: 2014-06-25 Impact factor: 54.908

6 in total

Displacement chemistry-based nanopore analysis of nucleic acids in complicated matrices.

1. Nanopore-based electrical and label-free sensing of enzyme activity in blood serum.

2. Measuring a frequency spectrum for single-molecule interactions with a confined nanopore.

3. Unzipping of Double-stranded DNA in Engineered α-Hemolysin Pores.

4. Engineered nanopore of Phi29 DNA-packaging motor for real-time detection of single colon cancer specific antibody in serum.

5. Slowing DNA Transport Using Graphene-DNA Interactions.

6. Nanopore label-free detection of single-nucleotide deletion in Baxα/BaxΔ2.

7. DINAMelt web server for nucleic acid melting prediction.

8. Internal vs fishhook hairpin DNA: unzipping locations and mechanisms in the α-hemolysin nanopore.

9. Identification of single amino acid differences in uniformly charged homopolymeric peptides with aerolysin nanopore.

10. Decoding long nanopore sequencing reads of natural DNA.

1. Enzymatic reaction-based nanopore detection of zinc ions.

2. Chemically functionalized conical PET nanopore for protein detection at the single-molecule level.

3. Nanoparticle-assisted detection of nucleic acids in a polymeric nanopore with a large pore size.

4. Recognition of Bimolecular Logic Operation Pattern Based on a Solid-State Nanopore.

5. Pattern Recognition of microRNA Expression in Body Fluids Using Nanopore Decoding at Subfemtomolar Concentrations.

6. DNA nanotechnology assisted nanopore-based analysis.