Literature DB >> 25765702

Tunable graphene quantum point contact transistor for DNA detection and characterization.

Anuj Girdhar1, Chaitanya Sathe, Klaus Schulten, Jean-Pierre Leburton.   

Abstract

A graphene membrane conductor containing a nanopore in a quantum point contact geometry is a promising candidate to sense, and potentially sequence, DNA molecules translocating through the nanopore. Within this geometry, the shape, size, and position of the nanopore as well as the edge configuration influences the membrane conductance caused by the electrostatic interaction between the DNA nucleotides and the nanopore edge. It is shown that the graphene conductance variations resulting from DNA translocation can be enhanced by choosing a particular geometry as well as by modulating the graphene Fermi energy, which demonstrates the ability to detect conformational transformations of a double-stranded DNA, as well as the passage of individual base pairs of a single-stranded DNA molecule through the nanopore.

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Year:  2015        PMID: 25765702      PMCID: PMC4400256          DOI: 10.1088/0957-4484/26/13/134005

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  28 in total

1.  Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.

Authors:  Jérôme Mathé; Aleksei Aksimentiev; David R Nelson; Klaus Schulten; Amit Meller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-19       Impact factor: 11.205

2.  Multilayered semiconductor membranes for nanopore ionic conductance modulation.

Authors:  Maria E Gracheva; Dmitriy V Melnikov; Jean-Pierre Leburton
Journal:  ACS Nano       Date:  2008-11-25       Impact factor: 15.881

Review 3.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

4.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

5.  Gate-Modulated Graphene Quantum Point Contact Device for DNA Sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  J Comput Electron       Date:  2014-12-01       Impact factor: 1.807

6.  Electronic detection of dsDNA transition from helical to zipper conformation using graphene nanopores.

Authors:  Chaitanya Sathe; Anuj Girdhar; Jean-Pierre Leburton; Klaus Schulten
Journal:  Nanotechnology       Date:  2014-10-17       Impact factor: 3.874

Review 7.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

Review 8.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

9.  Graphene quantum point contact transistor for DNA sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

10.  Detecting the translocation of DNA through a nanopore using graphene nanoribbons.

Authors:  F Traversi; C Raillon; S M Benameur; K Liu; S Khlybov; M Tosun; D Krasnozhon; A Kis; A Radenovic
Journal:  Nat Nanotechnol       Date:  2013-11-17       Impact factor: 39.213

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  3 in total

1.  Detection and Mapping of DNA Methylation with 2D Material Nanopores.

Authors:  Hu Qiu; Aditya Sarathy; Klaus Schulten; Jean-Pierre Leburton
Journal:  NPJ 2D Mater Appl       Date:  2017-04-11

2.  Electrically Tunable Quenching of DNA Fluctuations in Biased Solid-State Nanopores.

Authors:  Hu Qiu; Anuj Girdhar; Klaus Schulten; Jean-Pierre Leburton
Journal:  ACS Nano       Date:  2016-03-30       Impact factor: 15.881

3.  Intrinsic Stepwise Translocation of Stretched ssDNA in Graphene Nanopores.

Authors:  Hu Qiu; Aditya Sarathy; Jean-Pierre Leburton; Klaus Schulten
Journal:  Nano Lett       Date:  2015-11-25       Impact factor: 11.189

  3 in total

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