Literature DB >> 19833920

The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

T Martin Schmeing1, Rebecca M Voorhees1, Ann C Kelley1, Yong-Gui Gao1, Frank V Murphy1, John R Weir1, V Ramakrishnan1.   

Abstract

The ribosome selects a correct transfer RNA (tRNA) for each amino acid added to the polypeptide chain, as directed by messenger RNA. Aminoacyl-tRNA is delivered to the ribosome by elongation factor Tu (EF-Tu), which hydrolyzes guanosine triphosphate (GTP) and releases tRNA in response to codon recognition. The signaling pathway that leads to GTP hydrolysis upon codon recognition is critical to accurate decoding. Here we present the crystal structure of the ribosome complexed with EF-Tu and aminoacyl-tRNA, refined to 3.6 angstrom resolution. The structure reveals details of the tRNA distortion that allows aminoacyl-tRNA to interact simultaneously with the decoding center of the 30S subunit and EF-Tu at the factor binding site. A series of conformational changes in EF-Tu and aminoacyl-tRNA suggests a communication pathway between the decoding center and the guanosine triphosphatase center of EF-Tu.

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Year:  2009        PMID: 19833920      PMCID: PMC3763470          DOI: 10.1126/science.1179700

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  43 in total

1.  Kinetic determinants of high-fidelity tRNA discrimination on the ribosome.

Authors:  Kirill B Gromadski; Marina V Rodnina
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

Review 2.  Structural insights into translational fidelity.

Authors:  James M Ogle; V Ramakrishnan
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

3.  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Authors:  Jan-Christian Schuette; Frank V Murphy; Ann C Kelley; John R Weir; Jan Giesebrecht; Sean R Connell; Justus Loerke; Thorsten Mielke; Wei Zhang; Pawel A Penczek; V Ramakrishnan; Christian M T Spahn
Journal:  EMBO J       Date:  2009-02-19       Impact factor: 11.598

4.  Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis.

Authors:  Elizabeth Villa; Jayati Sengupta; Leonardo G Trabuco; Jamie LeBarron; William T Baxter; Tanvir R Shaikh; Robert A Grassucci; Poul Nissen; Måns Ehrenberg; Klaus Schulten; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

Review 5.  The GTPase superfamily: conserved structure and molecular mechanism.

Authors:  H R Bourne; D A Sanders; F McCormick
Journal:  Nature       Date:  1991-01-10       Impact factor: 49.962

6.  Visualization of elongation factor Tu on the Escherichia coli ribosome.

Authors:  H Stark; M V Rodnina; J Rinke-Appel; R Brimacombe; W Wintermeyer; M van Heel
Journal:  Nature       Date:  1997-09-25       Impact factor: 49.962

7.  Transient conformational states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu.

Authors:  M V Rodnina; R Fricke; W Wintermeyer
Journal:  Biochemistry       Date:  1994-10-11       Impact factor: 3.162

8.  Limited proteolysis and amino acid replacements in the effector region of Thermus thermophilus elongation factor Tu.

Authors:  W Zeidler; N K Schirmer; C Egle; S Ribeiro; R Kreutzer; M Sprinzl
Journal:  Eur J Biochem       Date:  1996-07-15

9.  Effects of the mutation glycine-222----aspartic acid on the functions of elongation factor Tu.

Authors:  G W Swart; A Parmeggiani; B Kraal; L Bosch
Journal:  Biochemistry       Date:  1987-04-07       Impact factor: 3.162

10.  Structure of the 70S ribosome complexed with mRNA and tRNA.

Authors:  Maria Selmer; Christine M Dunham; Frank V Murphy; Albert Weixlbaumer; Sabine Petry; Ann C Kelley; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2006-09-07       Impact factor: 47.728

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  261 in total

1.  Identifying conformational states of macromolecules by eigen-analysis of resampled cryo-EM images.

Authors:  Pawel A Penczek; Marek Kimmel; Christian M T Spahn
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

2.  Molecular basis for RNA polymerization by Qβ replicase.

Authors:  Daijiro Takeshita; Kozo Tomita
Journal:  Nat Struct Mol Biol       Date:  2012-01-15       Impact factor: 15.369

3.  Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.

Authors:  Jie Zhou; Laura Lancaster; Sergei Trakhanov; Harry F Noller
Journal:  RNA       Date:  2011-12-20       Impact factor: 4.942

4.  Biochemical characterization of ribosome assembly GTPase RbgA in Bacillus subtilis.

Authors:  David Achila; Megha Gulati; Nikhil Jain; Robert A Britton
Journal:  J Biol Chem       Date:  2012-01-20       Impact factor: 5.157

5.  Another burst of smoke: atomic resolution structures of RF3 bound to the ribosome.

Authors:  Megan E McDonald; Rachel Green
Journal:  RNA       Date:  2012-02-17       Impact factor: 4.942

6.  Archaeal ribosomal stalk protein interacts with translation factors in a nucleotide-independent manner via its conserved C terminus.

Authors:  Naoko Nomura; Takayoshi Honda; Kentaro Baba; Takao Naganuma; Takehito Tanzawa; Fumio Arisaka; Masanori Noda; Susumu Uchiyama; Isao Tanaka; Min Yao; Toshio Uchiumi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

7.  A conserved proline switch on the ribosome facilitates the recruitment and binding of trGTPases.

Authors:  Li Wang; Fang Yang; Dejiu Zhang; Zhi Chen; Rui-Ming Xu; Knud H Nierhaus; Weimin Gong; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2012-03-11       Impact factor: 15.369

8.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

9.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

10.  Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex.

Authors:  Derek Taylor; Anett Unbehaun; Wen Li; Sanchaita Das; Jianlin Lei; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

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