Literature DB >> 23686385

Fragment-based drug discovery using NMR spectroscopy.

Mary J Harner1, Andreas O Frank, Stephen W Fesik.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy has evolved into a powerful tool for fragment-based drug discovery over the last two decades. While NMR has been traditionally used to elucidate the three-dimensional structures and dynamics of biomacromolecules and their interactions, it can also be a very valuable tool for the reliable identification of small molecules that bind to proteins and for hit-to-lead optimization. Here, we describe the use of NMR spectroscopy as a method for fragment-based drug discovery and how to most effectively utilize this approach for discovering novel therapeutics based on our experience.

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Year:  2013        PMID: 23686385      PMCID: PMC3699969          DOI: 10.1007/s10858-013-9740-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  72 in total

1.  The maximal affinity of ligands.

Authors:  I D Kuntz; K Chen; K A Sharp; P A Kollman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  The inter-ligand Overhauser effect: a powerful new NMR approach for mapping structural relationships of macromolecular ligands.

Authors:  D Li; E F DeRose; R E London
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

3.  Privileged molecules for protein binding identified from NMR-based screening.

Authors:  P J Hajduk; M Bures; J Praestgaard; S W Fesik
Journal:  J Med Chem       Date:  2000-09-07       Impact factor: 7.446

Review 4.  Second-site NMR screening and linker design.

Authors:  Wolfgang Jahnke; Andreas Flörsheimer; Marcel J J Blommers; C Gregory Paris; Jutta Heim; Carlo M Nalin; Lawrence B Perez
Journal:  Curr Top Med Chem       Date:  2003       Impact factor: 3.295

Review 5.  The druggable genome.

Authors:  Andrew L Hopkins; Colin R Groom
Journal:  Nat Rev Drug Discov       Date:  2002-09       Impact factor: 84.694

6.  Spatial localization of ligand binding sites from electron current density surfaces calculated from NMR chemical shift perturbations.

Authors:  Mark A McCoy; Daniel F Wyss
Journal:  J Am Chem Soc       Date:  2002-10-02       Impact factor: 15.419

7.  Fluorine-NMR competition binding experiments for high-throughput screening of large compound mixtures.

Authors:  Claudio Dalvit; Maria Flocco; Marina Veronesi; Brian J Stockman
Journal:  Comb Chem High Throughput Screen       Date:  2002-12       Impact factor: 1.339

8.  Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor.

Authors:  M Mayer; B Meyer
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

Review 9.  Spin labels as a tool to identify and characterize protein-ligand interactions by NMR spectroscopy.

Authors:  Wolfgang Jahnke
Journal:  Chembiochem       Date:  2002-03-01       Impact factor: 3.164

10.  Identification of compounds with binding affinity to proteins via magnetization transfer from bulk water.

Authors:  C Dalvit; P Pevarello; M Tatò; M Veronesi; A Vulpetti; M Sundström
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

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  58 in total

1.  Extending the Detection Limit in Fragment Screening of Proteins Using Reverse Micelle Encapsulation.

Authors:  Brian Fuglestad; Nicole E Kerstetter; Sabrina Bédard; A Joshua Wand
Journal:  ACS Chem Biol       Date:  2019-10-03       Impact factor: 5.100

Review 2.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

3.  NMR Metabolomics Protocols for Drug Discovery.

Authors:  Fatema Bhinderwala; Robert Powers
Journal:  Methods Mol Biol       Date:  2019

4.  Pairwise binding competition experiments for sorting hub-protein/effector interaction hierarchy and simultaneous equilibria.

Authors:  Enrico Ravera; Azzurra Carlon; Giacomo Parigi
Journal:  J Biomol NMR       Date:  2014-09       Impact factor: 2.835

5.  Protein-ligand structure guided by backbone and side-chain proton chemical shift perturbations.

Authors:  Clémentine Aguirre; Tim ten Brink; Olivier Cala; Jean-François Guichou; Isabelle Krimm
Journal:  J Biomol NMR       Date:  2014-09-26       Impact factor: 2.835

6.  High affinity CXCR4 inhibitors generated by linking low affinity peptides.

Authors:  Chaozai Zhang; Lina S Huang; Ruohan Zhu; Qian Meng; Siyu Zhu; Yan Xu; Huijun Zhang; Xiong Fang; Xingquan Zhang; Jiao Zhou; Robert T Schooley; Xiaohong Yang; Ziwei Huang; Jing An
Journal:  Eur J Med Chem       Date:  2019-04-01       Impact factor: 6.514

7.  Functional chromatographic technique for natural product isolation.

Authors:  Eric C Lau; Damian J Mason; Nicole Eichhorst; Pearce Engelder; Celestina Mesa; E M Kithsiri Wijeratne; G M Kamal B Gunaherath; A A Leslie Gunatilaka; James J La Clair; Eli Chapman
Journal:  Org Biomol Chem       Date:  2015-02-28       Impact factor: 3.876

Review 8.  Biophysics in drug discovery: impact, challenges and opportunities.

Authors:  Jean-Paul Renaud; Chun-Wa Chung; U Helena Danielson; Ursula Egner; Michael Hennig; Roderick E Hubbard; Herbert Nar
Journal:  Nat Rev Drug Discov       Date:  2016-08-12       Impact factor: 84.694

Review 9.  Twenty years on: the impact of fragments on drug discovery.

Authors:  Daniel A Erlanson; Stephen W Fesik; Roderick E Hubbard; Wolfgang Jahnke; Harren Jhoti
Journal:  Nat Rev Drug Discov       Date:  2016-07-15       Impact factor: 84.694

10.  Statistical removal of background signals from high-throughput (1)H NMR line-broadening ligand-affinity screens.

Authors:  Bradley Worley; Nicholas J Sisco; Robert Powers
Journal:  J Biomol NMR       Date:  2015-07-09       Impact factor: 2.835

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