Literature DB >> 10549135

The inter-ligand Overhauser effect: a powerful new NMR approach for mapping structural relationships of macromolecular ligands.

D Li1, E F DeRose, R E London.   

Abstract

NMR experiments that transfer conformational information from the bound to the uncomplexed state via exchange have been utilized for many years. It is demonstrated here that inter-ligand NOEs ('ILOEs'), which exist in ternary complexes with enzymes or other macromolecular receptors, can be transferred via exchange to pairs of uncomplexed ligands. This approach is illustrated by studies of glycolate + NAD+ in the presence of porcine heart lactate dehydrogenase, and by glucose-6-phosphate + NADPH in the presence of L. mesenteroides glucose-6-phosphate dehydrogenase. This strategy opens up a general methodology for exploring the active sites of enzymes and for the development of artificial ligands which can function as inhibitors, or more generally as modifiers of protein function.

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Year:  1999        PMID: 10549135     DOI: 10.1023/a:1008360208627

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

1.  Determination of ligand conformation in macromolecular complexes using the transferred nuclear Overhauser effect.

Authors:  A M Gronenborn; G M Clore
Journal:  Biochem Pharmacol       Date:  1990-07-01       Impact factor: 5.858

2.  Determination of the hydride transfer stereospecificity of nicotinamide adenine dinucleotide linked oxidoreductases by proton magnetic resonance.

Authors:  L J Arnold; K You; W S Allison; N O Kaplan
Journal:  Biochemistry       Date:  1976-11-02       Impact factor: 3.162

3.  Complete relaxation and conformational exchange matrix (CORCEMA) analysis of NOESY spectra of interacting systems; two-dimensional transferred NOESY.

Authors:  H N Moseley; E V Curto; N R Krishna
Journal:  J Magn Reson B       Date:  1995-09

4.  The conformation of NAD+ bound to lactate dehydrogenase determined by nuclear magnetic resonance with suppression of spin diffusion.

Authors:  S J Vincent; C Zwahlen; C B Post; J W Burgner; G Bodenhausen
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-29       Impact factor: 11.205

5.  A transfer nuclear Overhauser effect study of coenzyme binding to distinct sites in binary and ternary complexes in glutamate dehydrogenase.

Authors:  A Banerjee; H R Levy; G C Levy; C LiMuti; B M Goldstein; J E Bell
Journal:  Biochemistry       Date:  1987-12-15       Impact factor: 3.162

6.  Reassociation of lactic dehydrogenase from pig heart studied by cross-linking with glutaraldehyde.

Authors:  G Bernhardt; R Rudolph; R Jaenicke
Journal:  Z Naturforsch C Biosci       Date:  1981 Sep-Oct

7.  Kinetic formulations for the oxidation and the reduction of glyoxylate by lactate dehydrogenase.

Authors:  C Lluis; J Bozal
Journal:  Biochim Biophys Acta       Date:  1977-02-09

8.  Protein mediated magnetic coupling between lactate and water protons.

Authors:  S D Swanson
Journal:  J Magn Reson       Date:  1998-11       Impact factor: 2.229

9.  Reduction of nicotinamide adenine dinucleotides by sodium cyanoborohydride.

Authors:  G Avigad
Journal:  Biochim Biophys Acta       Date:  1979-11-09

10.  The three-dimensional structure of glucose 6-phosphate dehydrogenase from Leuconostoc mesenteroides refined at 2.0 A resolution.

Authors:  P Rowland; A K Basak; S Gover; H R Levy; M J Adams
Journal:  Structure       Date:  1994-11-15       Impact factor: 5.006

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  14 in total

1.  NMR-based structural characterization of large protein-ligand interactions.

Authors:  Maurizio Pellecchia; David Meininger; Qing Dong; Edcon Chang; Rick Jack; Daniel S Sem
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

2.  Small molecules containing hetero-bicyclic ring systems compete with UDP-Glc for binding to WaaG glycosyltransferase.

Authors:  Jens Landström; Karina Persson; Christoph Rademacher; Magnus Lundborg; Warren Wakarchuk; Thomas Peters; Göran Widmalm
Journal:  Glycoconj J       Date:  2012-06-19       Impact factor: 2.916

3.  Enhanced signal dispersion in saturation transfer difference experiments by conversion to a 1D-STD-homodecoupled spectrum.

Authors:  Manuel Martín-Pastor; Marino Vega-Vázquez; Antonia De Capua; Angeles Canales; Sabine André; Hans-Joachim Gabius; Jesús Jiménez-Barbero
Journal:  J Biomol NMR       Date:  2006-09-20       Impact factor: 2.835

4.  Data quality in drug discovery: the role of analytical performance in ligand binding assays.

Authors:  Hermann Wätzig; Imke Oltmann-Norden; Franziska Steinicke; Hassan A Alhazmi; Markus Nachbar; Deia Abd El-Hady; Hassan M Albishri; Knut Baumann; Thomas Exner; Frank M Böckler; Sami El Deeb
Journal:  J Comput Aided Mol Des       Date:  2015-06-13       Impact factor: 3.686

5.  Fragment-based discovery of novel thymidylate synthase leads by NMR screening and group epitope mapping.

Authors:  Darren W Begley; Suxin Zheng; Gabriele Varani
Journal:  Chem Biol Drug Des       Date:  2010-07-05       Impact factor: 2.817

6.  A small-molecule probe induces a conformation in HIV TAR RNA capable of binding drug-like fragments.

Authors:  Amy Davidson; Darren W Begley; Carmen Lau; Gabriele Varani
Journal:  J Mol Biol       Date:  2011-07-29       Impact factor: 5.469

7.  NMR reveals double occupancy of quinone-type ligands in the catalytic quinone binding site of the Na+-translocating NADH:Quinone oxidoreductase from Vibrio cholerae.

Authors:  Ruslan Nedielkov; Wojtek Steffen; Julia Steuber; Heiko M Möller
Journal:  J Biol Chem       Date:  2013-09-03       Impact factor: 5.157

8.  Leveraging structure determination with fragment screening for infectious disease drug targets: MECP synthase from Burkholderia pseudomallei.

Authors:  Darren W Begley; Robert C Hartley; Douglas R Davies; Thomas E Edwards; Jess T Leonard; Jan Abendroth; Courtney A Burris; Janhavi Bhandari; Peter J Myler; Bart L Staker; Lance J Stewart
Journal:  J Struct Funct Genomics       Date:  2011-02-26

Review 9.  Fragment-based drug discovery using NMR spectroscopy.

Authors:  Mary J Harner; Andreas O Frank; Stephen W Fesik
Journal:  J Biomol NMR       Date:  2013-05-18       Impact factor: 2.835

10.  A method for the second-site screening of K-Ras in the presence of a covalently attached first-site ligand.

Authors:  Qi Sun; Jason Phan; Anders R Friberg; DeMarco V Camper; Edward T Olejniczak; Stephen W Fesik
Journal:  J Biomol NMR       Date:  2014-08-03       Impact factor: 2.835

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