Literature DB >> 30306530

The role of small-angle scattering in structure-based screening applications.

Po-Chia Chen1, Janosch Hennig2.   

Abstract

In many biomolecular interactions, changes in the assembly states and structural conformations of participants can act as a complementary reporter of binding to functional and thermodynamic assays. This structural information is captured by a number of structural biology and biophysical techniques that are viable either as primary screens in small-scale applications or as secondary screens to complement higher throughput methods. In particular, small-angle X-ray scattering (SAXS) reports the average distance distribution between all atoms after orientational averaging. Such information is important when for example investigating conformational changes involved in inhibitory and regulatory mechanisms where binding events do not necessarily cause functional changes. Thus, we summarise here the current and prospective capabilities of SAXS-based screening in the context of other methods that yield structural information. Broad guidelines are also provided to assist readers in preparing screening protocols that are tailored to available X-ray sources.

Entities:  

Keywords:  Screening; Small-angle scattering; Structural biology

Year:  2018        PMID: 30306530      PMCID: PMC6233350          DOI: 10.1007/s12551-018-0464-x

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  142 in total

1.  SAXS-Guided Metadynamics.

Authors:  Dari Kimanius; Ingrid Pettersson; Gerd Schluckebier; Erik Lindahl; Magnus Andersson
Journal:  J Chem Theory Comput       Date:  2015-07-14       Impact factor: 6.006

2.  Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data.

Authors:  Alexander Grishaev; Justin Wu; Jill Trewhella; Ad Bax
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

3.  Upgrade of MacCHESS facility for X-ray scattering of biological macromolecules in solution.

Authors:  Alvin Samuel Acerbo; Michael J Cook; Richard Edward Gillilan
Journal:  J Synchrotron Radiat       Date:  2015-01-01       Impact factor: 2.616

4.  PDMS-based turbulent microfluidic mixer.

Authors:  Jae Bem You; Kyowon Kang; Thanh Tinh Tran; Hongkeun Park; Wook Ryol Hwang; Ju Min Kim; Sung Gap Im
Journal:  Lab Chip       Date:  2015-04-07       Impact factor: 6.799

5.  Combining NMR and small angle X-ray and neutron scattering in the structural analysis of a ternary protein-RNA complex.

Authors:  Janosch Hennig; Iren Wang; Miriam Sonntag; Frank Gabel; Michael Sattler
Journal:  J Biomol NMR       Date:  2013-03-03       Impact factor: 2.835

Review 6.  Small-angle scattering and 3D structure interpretation.

Authors:  Jill Trewhella
Journal:  Curr Opin Struct Biol       Date:  2016-05-30       Impact factor: 6.809

7.  Small-angle scattering determination of the shape and localization of human cytochrome P450 embedded in a phospholipid nanodisc environment.

Authors:  Nicholas Skar-Gislinge; Søren A R Kynde; Ilia G Denisov; Xin Ye; Ivan Lenov; Stephen G Sligar; Lise Arleth
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-11-26

8.  Small angle X-ray scattering as a high-throughput method to classify antimicrobial modes of action.

Authors:  A R von Gundlach; V M Garamus; T Gorniak; H A Davies; M Reischl; R Mikut; K Hilpert; A Rosenhahn
Journal:  Biochim Biophys Acta       Date:  2015-12-28

9.  Biophysical screening for the discovery of small-molecule ligands.

Authors:  Alessio Ciulli
Journal:  Methods Mol Biol       Date:  2013

Review 10.  Theory and applications of surface plasmon resonance, resonant mirror, resonant waveguide grating, and dual polarization interferometry biosensors.

Authors:  Hikmat N Daghestani; Billy W Day
Journal:  Sensors (Basel)       Date:  2010-11-01       Impact factor: 3.576

View more
  1 in total

Review 1.  Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology.

Authors:  Chris A Brosey; John A Tainer
Journal:  Curr Opin Struct Biol       Date:  2019-06-13       Impact factor: 6.809

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.