Literature DB >> 23624110

Reconstitution of selenocysteine incorporation reveals intrinsic regulation by SECIS elements.

Nirupama Gupta1, Louise W DeMong, Sowmya Banda, Paul R Copeland.   

Abstract

Selenoproteins are present in all three domains of life and are responsible for a major part of a cell's antioxidant defense against reactive oxygen species. Synthesis of selenoproteins requires the decoding of a UGA codon as selenocysteine (Sec) instead of translation termination. Sec is incorporated into the growing polypeptide chain during translation elongation and is known to require a set of highly specific factors: the Sec insertion sequence (SECIS) element in the 3' untranslated region, Sec-tRNA(Sec), the Sec-specific elongation factor eEFSec, and SECIS binding protein 2. Since reconstitution has not been reported, whether these factors are sufficient is unknown. Here, we report a novel in vitro translation system in which Sec incorporation has been reconstituted from purified components introduced into a Sec naive system. In addition, we developed a novel method to purify Sec-tRNA(Sec) and active eEFSec/GTP/tRNA ternary complex. We found that the known basal factors are sufficient for Sec incorporation in vitro. Using this highly manipulable system, we have also found that ribosomes from non-Sec-utilizing organisms cannot support Sec incorporation and that some SECIS elements are intrinsically less efficient than others. Having identified the essential set of factors, this work removes a significant barrier to our understanding of the mechanism of Sec incorporation.
Copyright © 2013. Published by Elsevier Ltd.

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Year:  2013        PMID: 23624110      PMCID: PMC3699960          DOI: 10.1016/j.jmb.2013.04.016

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  27 in total

1.  Decoding apparatus for eukaryotic selenocysteine insertion.

Authors:  R M Tujebajeva; P R Copeland; X M Xu; B A Carlson; J W Harney; D M Driscoll; D L Hatfield; M J Berry
Journal:  EMBO Rep       Date:  2000-08       Impact factor: 8.807

2.  A novel RNA binding protein, SBP2, is required for the translation of mammalian selenoprotein mRNAs.

Authors:  P R Copeland; J E Fletcher; B A Carlson; D L Hatfield; D M Driscoll
Journal:  EMBO J       Date:  2000-01-17       Impact factor: 11.598

3.  Insight into mammalian selenocysteine insertion: domain structure and ribosome binding properties of Sec insertion sequence binding protein 2.

Authors:  P R Copeland; V A Stepanik; D M Driscoll
Journal:  Mol Cell Biol       Date:  2001-03       Impact factor: 4.272

4.  Structural analysis of new local features in SECIS RNA hairpins.

Authors:  D Fagegaltier; A Lescure; R Walczak; P Carbon; A Krol
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

5.  Transfer RNAs that insert selenocysteine.

Authors:  Bradley A Carlson; Dolph L Hatfield
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

6.  Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis.

Authors:  Eric Jan; Terri Goss Kinzy; Peter Sarnow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

7.  Efficiency of mammalian selenocysteine incorporation.

Authors:  Anupama Mehta; Cheryl M Rebsch; Scott A Kinzy; Julia E Fletcher; Paul R Copeland
Journal:  J Biol Chem       Date:  2004-06-30       Impact factor: 5.157

8.  Characterization of mSelB, a novel mammalian elongation factor for selenoprotein translation.

Authors:  D Fagegaltier; N Hubert; K Yamada; T Mizutani; P Carbon; A Krol
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

9.  Characterization of mammalian selenoproteomes.

Authors:  Gregory V Kryukov; Sergi Castellano; Sergey V Novoselov; Alexey V Lobanov; Omid Zehtab; Roderic Guigó; Vadim N Gladyshev
Journal:  Science       Date:  2003-05-30       Impact factor: 47.728

10.  Functional characterization of the eukaryotic SECIS elements which direct selenocysteine insertion at UGA codons.

Authors:  M J Berry; L Banu; J W Harney; P R Larsen
Journal:  EMBO J       Date:  1993-08       Impact factor: 11.598

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  18 in total

Review 1.  Molecular mechanism of selenoprotein P synthesis.

Authors:  Sumangala Shetty; Paul R Copeland
Journal:  Biochim Biophys Acta Gen Subj       Date:  2018-04-12       Impact factor: 3.770

2.  Regulation of selenocysteine incorporation into the selenium transport protein, selenoprotein P.

Authors:  Sumangala P Shetty; Ravi Shah; Paul R Copeland
Journal:  J Biol Chem       Date:  2014-07-25       Impact factor: 5.157

Review 3.  Selenoproteins: molecular pathways and physiological roles.

Authors:  Vyacheslav M Labunskyy; Dolph L Hatfield; Vadim N Gladyshev
Journal:  Physiol Rev       Date:  2014-07       Impact factor: 37.312

4.  Processive Recoding and Metazoan Evolution of Selenoprotein P: Up to 132 UGAs in Molluscs.

Authors:  Janinah Baclaocos; Didac Santesmasses; Marco Mariotti; Katarzyna Bierła; Michael B Vetick; Sharon Lynch; Rob McAllen; John J Mackrill; Gary Loughran; Roderic Guigó; Joanna Szpunar; Paul R Copeland; Vadim N Gladyshev; John F Atkins
Journal:  J Mol Biol       Date:  2019-08-20       Impact factor: 5.469

5.  The utilization of selenocysteine-tRNA[Ser]Sec isoforms is regulated in part at the level of translation in vitro.

Authors:  Bradley A Carlson; Nirupama Gupta; Mark H Pinkerton; Dolph L Hatfield; Paul R Copeland
Journal:  Translation (Austin)       Date:  2017-04-03

6.  Bioinformatics of Selenoproteins.

Authors:  Didac Santesmasses; Marco Mariotti; Vadim N Gladyshev
Journal:  Antioxid Redox Signal       Date:  2020-04-23       Impact factor: 8.401

Review 7.  Recent advances in the optical control of protein function through genetic code expansion.

Authors:  Taylor Courtney; Alexander Deiters
Journal:  Curr Opin Chem Biol       Date:  2018-07-26       Impact factor: 8.822

8.  Processive incorporation of multiple selenocysteine residues is driven by a novel feature of the selenocysteine insertion sequence.

Authors:  Sumangala P Shetty; Ryan Sturts; Michael Vetick; Paul R Copeland
Journal:  J Biol Chem       Date:  2018-10-15       Impact factor: 5.157

9.  A synthetic tRNA for EF-Tu mediated selenocysteine incorporation in vivo and in vitro.

Authors:  Corwin Miller; Markus J Bröcker; Laure Prat; Kevan Ip; Napon Chirathivat; Alexander Feiock; Miklós Veszprémi; Dieter Söll
Journal:  FEBS Lett       Date:  2015-07-06       Impact factor: 4.124

10.  Concerted 2-5A-Mediated mRNA Decay and Transcription Reprogram Protein Synthesis in the dsRNA Response.

Authors:  Sneha Rath; Eliza Prangley; Jesse Donovan; Kaitlin Demarest; Ned S Wingreen; Yigal Meir; Alexei Korennykh
Journal:  Mol Cell       Date:  2019-09-04       Impact factor: 17.970

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