Literature DB >> 14673072

Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis.

Eric Jan1, Terri Goss Kinzy, Peter Sarnow.   

Abstract

The cricket paralysis virus internal ribosome entry site (IRES) can, in the absence of canonical initiation factors and initiator tRNA (Met-tRNAi), occupy the ribosomal P-site and assemble 80S ribosomes. Here we show that the IRES assembles mRNA-80S ribosome complexes by recruitment of 60S subunits to preformed IRES-40S complexes. Addition of eukaryotic elongation factors eEF1A and eEF2 and aminoacylated elongator tRNAs resulted in the synthesis of peptides, implying that the IRES RNA itself mimics the function of Met-tRNAi in the P-site to trigger the first translocation step without peptide bond formation. IRES-80S complexes that contained a stop codon in the A-site recruited eukaryotic release factor eRF1, resulting in ribosome rearrangements in a surprisingly eEF2-dependent manner. Thus, this P-site-occupying IRES directs the assembly of 80S ribosomes, sets the translational reading frame, and mimics the functions of both Met-tRNAi and peptidyl tRNA to support elongation and termination.

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Year:  2003        PMID: 14673072      PMCID: PMC307581          DOI: 10.1073/pnas.2535183100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Novel roles for classical factors at the interface between translation termination and initiation.

Authors:  R Karimi; M Y Pavlov; R H Buckingham; M Ehrenberg
Journal:  Mol Cell       Date:  1999-05       Impact factor: 17.970

Review 2.  Endless possibilities: translation termination and stop codon recognition.

Authors:  Gwyneth Bertram; Shona Innes; Odile Minella; Jonathan P Richardson; Ian Stansfield
Journal:  Microbiology (Reading)       Date:  2001-02       Impact factor: 2.777

3.  Role of ribosome recycling factor (RRF) in translational coupling.

Authors:  Y Inokuchi; A Hirashima; Y Sekine; L Janosi; A Kaji
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

Review 4.  Internal ribosome entry sites in eukaryotic mRNA molecules.

Authors:  C U Hellen; P Sarnow
Journal:  Genes Dev       Date:  2001-07-01       Impact factor: 11.361

5.  The polypeptide chain release factor eRF1 specifically contacts the s(4)UGA stop codon located in the A site of eukaryotic ribosomes.

Authors:  L Chavatte; L Frolova; L Kisselev; A Favre
Journal:  Eur J Biochem       Date:  2001-05

6.  Initiation of protein synthesis from the A site of the ribosome.

Authors:  J E Wilson; T V Pestova; C U Hellen; P Sarnow
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

Review 7.  Release factors and their role as decoding proteins: specificity and fidelity for termination of protein synthesis.

Authors:  E Poole; W Tate
Journal:  Biochim Biophys Acta       Date:  2000-09-07

8.  A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation.

Authors:  Y Kanamori; N Nakashima
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

9.  Methionine-independent initiation of translation in the capsid protein of an insect RNA virus.

Authors:  J Sasaki; N Nakashima
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

Review 10.  Translational termination comes of age.

Authors:  L L Kisselev; R H Buckingham
Journal:  Trends Biochem Sci       Date:  2000-11       Impact factor: 13.807

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  74 in total

1.  Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site.

Authors:  Qian Ren; Qing S Wang; Andrew E Firth; Mandy M Y Chan; Joost W Gouw; M Marta Guarna; Leonard J Foster; John F Atkins; Eric Jan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-13       Impact factor: 11.205

2.  Modular domains of the Dicistroviridae intergenic internal ribosome entry site.

Authors:  Christopher J Jang; Eric Jan
Journal:  RNA       Date:  2010-04-27       Impact factor: 4.942

3.  A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs.

Authors:  David Costantino; Jeffrey S Kieft
Journal:  RNA       Date:  2005-03       Impact factor: 4.942

Review 4.  Plant virus RNAs. Coordinated recruitment of conserved host functions by (+) ssRNA viruses during early infection events.

Authors:  Karine Thivierge; Valérie Nicaise; Philippe J Dufresne; Sophie Cotton; Jean-François Laliberté; Olivier Le Gall; Marc G Fortin
Journal:  Plant Physiol       Date:  2005-08       Impact factor: 8.340

5.  Factor-independent assembly of elongation-competent ribosomes by an internal ribosome entry site located in an RNA virus that infects penaeid shrimp.

Authors:  Randal C Cevallos; Peter Sarnow
Journal:  J Virol       Date:  2005-01       Impact factor: 5.103

6.  Initiation factor-independent translation mediated by the hepatitis C virus internal ribosome entry site.

Authors:  Alissa M Lancaster; Eric Jan; Peter Sarnow
Journal:  RNA       Date:  2006-03-23       Impact factor: 4.942

Review 7.  Regulation of translation initiation in eukaryotes: mechanisms and biological targets.

Authors:  Nahum Sonenberg; Alan G Hinnebusch
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

8.  A cross-kingdom internal ribosome entry site reveals a simplified mode of internal ribosome entry.

Authors:  Ilya M Terenin; Sergei E Dmitriev; Dmitri E Andreev; Elizabeth Royall; Graham J Belsham; Lisa O Roberts; Ivan N Shatsky
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

9.  Translation initiation factors are not required for Dicistroviridae IRES function in vivo.

Authors:  Nilsa Deniz; Erik M Lenarcic; Dori M Landry; Sunnie R Thompson
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

10.  RPS25 is essential for translation initiation by the Dicistroviridae and hepatitis C viral IRESs.

Authors:  Dori M Landry; Marla I Hertz; Sunnie R Thompson
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

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