Literature DB >> 26160755

A synthetic tRNA for EF-Tu mediated selenocysteine incorporation in vivo and in vitro.

Corwin Miller1, Markus J Bröcker2, Laure Prat2, Kevan Ip2, Napon Chirathivat2, Alexander Feiock2, Miklós Veszprémi2, Dieter Söll3.   

Abstract

Incorporation of selenocysteine (Sec) in bacteria requires a UGA codon that is reassigned to Sec by the Sec-specific elongation factor SelB and a conserved mRNA motif (SECIS element). These requirements severely restrict the engineering of selenoproteins. Earlier, a synthetic tRNASec was reported that allowed canonical Sec incorporation by EF-Tu; however, serine misincorporation limited its scope. We report a superior tRNASec variant (tRNAUTuX) that facilitates EF-Tu dependent stoichiometric Sec insertion in response to UAG both in vivo in Escherichia coli and in vitro in a cellfree protein synthesis system. We also demonstrate recoding of several sense codons in a SelB supplemented cell-free system. These advances in Sec incorporation will aid rational design and directed evolution of selenoproteins.
Copyright © 2015 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cell-free protein synthesis; In vitro translation; Non-canonical amino acid; Selenocysteine; Selenoprotein

Mesh:

Substances:

Year:  2015        PMID: 26160755      PMCID: PMC4782793          DOI: 10.1016/j.febslet.2015.06.039

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  24 in total

1.  Tissue sulfhydryl groups.

Authors:  G L ELLMAN
Journal:  Arch Biochem Biophys       Date:  1959-05       Impact factor: 4.013

2.  Efficiency of mammalian selenocysteine incorporation.

Authors:  Anupama Mehta; Cheryl M Rebsch; Scott A Kinzy; Julia E Fletcher; Paul R Copeland
Journal:  J Biol Chem       Date:  2004-06-30       Impact factor: 5.157

3.  Reconstitution of selenocysteine incorporation reveals intrinsic regulation by SECIS elements.

Authors:  Nirupama Gupta; Louise W DeMong; Sowmya Banda; Paul R Copeland
Journal:  J Mol Biol       Date:  2013-04-23       Impact factor: 5.469

4.  Understanding the sequence specificity of tRNA binding to elongation factor Tu using tRNA mutagenesis.

Authors:  Jared M Schrader; Stephen J Chapman; Olke C Uhlenbeck
Journal:  J Mol Biol       Date:  2009-03-13       Impact factor: 5.469

5.  Recoding the genetic code with selenocysteine.

Authors:  Markus J Bröcker; Joanne M L Ho; George M Church; Dieter Söll; Patrick O'Donoghue
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-03       Impact factor: 15.336

6.  Decameric SelA•tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation.

Authors:  Yuzuru Itoh; Markus J Bröcker; Shun-ichi Sekine; Gifty Hammond; Shiro Suetsugu; Dieter Söll; Shigeyuki Yokoyama
Journal:  Science       Date:  2013-04-05       Impact factor: 47.728

7.  Antideterminants present in minihelix(Sec) hinder its recognition by prokaryotic elongation factor Tu.

Authors:  J Rudinger; R Hillenbrandt; M Sprinzl; R Giegé
Journal:  EMBO J       Date:  1996-02-01       Impact factor: 11.598

8.  Direct detection of potential selenium delivery proteins by using an Escherichia coli strain unable to incorporate selenium from selenite into proteins.

Authors:  Gerard M Lacourciere; Rodney L Levine; Thressa C Stadtman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-25       Impact factor: 11.205

9.  Rewiring translation for elongation factor Tu-dependent selenocysteine incorporation.

Authors:  Caroline Aldag; Markus J Bröcker; Michael J Hohn; Laure Prat; Gifty Hammond; Abigail Plummer; Dieter Söll
Journal:  Angew Chem Int Ed Engl       Date:  2012-11-27       Impact factor: 15.336

10.  Wobble decoding by the Escherichia coli selenocysteine insertion machinery.

Authors:  Jianqiang Xu; Victor Croitoru; Dorothea Rutishauser; Qing Cheng; Elias S J Arnér
Journal:  Nucleic Acids Res       Date:  2013-08-27       Impact factor: 16.971

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  24 in total

1.  Selenocysteine Insertion at a Predefined UAG Codon in a Release Factor 1 (RF1)-depleted Escherichia coli Host Strain Bypasses Species Barriers in Recombinant Selenoprotein Translation.

Authors:  Qing Cheng; Elias S J Arnér
Journal:  J Biol Chem       Date:  2017-02-13       Impact factor: 5.157

2.  Utilizing Selenocysteine for Expressed Protein Ligation and Bioconjugations.

Authors:  Jun Liu; Qingqing Chen; Sharon Rozovsky
Journal:  J Am Chem Soc       Date:  2017-02-27       Impact factor: 15.419

Review 3.  Rewriting the Genetic Code.

Authors:  Takahito Mukai; Marc J Lajoie; Markus Englert; Dieter Söll
Journal:  Annu Rev Microbiol       Date:  2017-07-11       Impact factor: 15.500

4.  Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs.

Authors:  Xian Fu; Ana Crnković; Anastasia Sevostyanova; Dieter Söll
Journal:  FEBS Lett       Date:  2018-10-24       Impact factor: 4.124

5.  In Vivo Biosynthesis of a β-Amino Acid-Containing Protein.

Authors:  Clarissa Melo Czekster; Wesley E Robertson; Allison S Walker; Dieter Söll; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2016-04-18       Impact factor: 15.419

6.  Site-Specific Incorporation of Selenocysteine Using an Expanded Genetic Code and Palladium-Mediated Chemical Deprotection.

Authors:  Jun Liu; Feng Zheng; Rujin Cheng; Shanshan Li; Sharon Rozovsky; Qian Wang; Lei Wang
Journal:  J Am Chem Soc       Date:  2018-07-09       Impact factor: 15.419

Review 7.  Challenges of site-specific selenocysteine incorporation into proteins by Escherichia coli.

Authors:  Xian Fu; Dieter Söll; Anastasia Sevostyanova
Journal:  RNA Biol       Date:  2018-03-12       Impact factor: 4.652

Review 8.  Synthesis and semisynthesis of selenopeptides and selenoproteins.

Authors:  Jun Liu; Rujin Cheng; Sharon Rozovsky
Journal:  Curr Opin Chem Biol       Date:  2018-04-30       Impact factor: 8.822

Review 9.  Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology.

Authors:  Jiqiang Ling; Patrick O'Donoghue; Dieter Söll
Journal:  Nat Rev Microbiol       Date:  2015-09-22       Impact factor: 60.633

10.  [A facile method for producing selenocysteine-containing proteins].

Authors:  Takahito Mukai; Anastasia Sevostyanova; Tateki Suzuki; Xian Fu; Dieter Söll
Journal:  Angew Chem Weinheim Bergstr Ger       Date:  2018-04-06
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