Literature DB >> 23562665

Dynamic nuclear polarization-enhanced 13C NMR spectroscopy of static biological solids.

Alexey Potapov1, Wai-Ming Yau, Robert Tycko.   

Abstract

We explore the possibility of using dynamic nuclear polarization (DNP) to enhance signals in structural studies of biological solids by solid state NMR without sample spinning. Specifically, we use 2D (13)C-(13)C exchange spectroscopy to probe the peptide backbone torsion angles (φ, ψ) in a series of selectively (13)C-labeled 40-residue β-amyloid (Aβ(1-40)) samples, in both fibrillar and non-fibrillar states. Experiments are carried out at 9.39 T and 8 K, using a static double-resonance NMR probe and low-power microwave irradiation at 264 GHz. In frozen solutions of Aβ(1-40) fibrils doped with DOTOPA-TEMPO, we observe DNP signal enhancement factors of 16-21. We show that the orientation- and frequency-dependent spin polarization exchange between sequential backbone carbonyl (13)C labels can be simulated accurately using a simple expression for the exchange rate, after experimentally determined homogeneous (13)C lineshapes are incorporated in the simulations. The experimental 2D (13)C-(13)C exchange spectra place constraints on the φ and ψ angles between the two carbonyl labels. Although the data are not sufficient to determine φ and ψ uniquely, the data do provide non-trivial constraints that could be included in structure calculations. With DNP at low temperatures, 2D (13)C-(13)C exchange spectra can be obtained from a 3.5 mg sample of Aβ(1-40) fibrils in 4 h or less, despite the broad (13)C chemical shift anisotropy line shapes that are observed in static samples. Published by Elsevier Inc.

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Year:  2013        PMID: 23562665      PMCID: PMC3660528          DOI: 10.1016/j.jmr.2013.02.011

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  44 in total

1.  Dynamic nuclear polarization-enhanced solid-state NMR spectroscopy of GNNQQNY nanocrystals and amyloid fibrils.

Authors:  Galia T Debelouchina; Marvin J Bayro; Patrick C A van der Wel; Marc A Caporini; Alexander B Barnes; Melanie Rosay; Werner E Maas; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

2.  Characterization of membrane proteins in isolated native cellular membranes by dynamic nuclear polarization solid-state NMR spectroscopy without purification and reconstitution.

Authors:  Tomas Jacso; W Trent Franks; Honor Rose; Uwe Fink; Jana Broecker; Sandro Keller; Hartmut Oschkinat; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-23       Impact factor: 15.336

3.  Surface enhanced NMR spectroscopy by dynamic nuclear polarization.

Authors:  Anne Lesage; Moreno Lelli; David Gajan; Marc A Caporini; Veronika Vitzthum; Pascal Miéville; Johan Alauzun; Arthur Roussey; Chloé Thieuleux; Ahmad Mehdi; Geoffrey Bodenhausen; Christophe Copéret; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

4.  Solid-state NMR spectroscopy of oriented membrane polypeptides at 100 K with signal enhancement by dynamic nuclear polarization.

Authors:  Evgeniy Salnikov; Melanie Rosay; Shane Pawsey; Olivier Ouari; Paul Tordo; Burkhard Bechinger
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

5.  A low-cost implementation of EPR detection in a dissolution DNP setup.

Authors:  Josef Granwehr; James Leggett; Walter Köckenberger
Journal:  J Magn Reson       Date:  2007-05-24       Impact factor: 2.229

6.  Beyond the silica surface by direct silicon-29 dynamic nuclear polarization.

Authors:  Olivier Lafon; Melanie Rosay; Fabien Aussenac; Xingyu Lu; Julien Trébosc; Odile Cristini; Christophe Kinowski; Nadia Touati; Hervé Vezin; Jean-Paul Amoureux
Journal:  Angew Chem Int Ed Engl       Date:  2011-07-18       Impact factor: 15.336

7.  Dynamic nuclear polarization of amyloidogenic peptide nanocrystals: GNNQQNY, a core segment of the yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Kan-Nian Hu; Józef Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2006-08-23       Impact factor: 15.419

8.  TOTAPOL: a biradical polarizing agent for dynamic nuclear polarization experiments in aqueous media.

Authors:  Changsik Song; Kan-Nian Hu; Chan-Gyu Joo; Timothy M Swager; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2006-09-06       Impact factor: 15.419

9.  Dynamic nuclear polarization-enhanced solid-state NMR of a 13C-labeled signal peptide bound to lipid-reconstituted Sec translocon.

Authors:  Lenica Reggie; Jakob J Lopez; Ian Collinson; Clemens Glaubitz; Mark Lorch
Journal:  J Am Chem Soc       Date:  2011-11-07       Impact factor: 15.419

10.  Quantum mechanical theory of dynamic nuclear polarization in solid dielectrics.

Authors:  Kan-Nian Hu; Galia T Debelouchina; Albert A Smith; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

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  12 in total

1.  Topical Developments in High-Field Dynamic Nuclear Polarization.

Authors:  Vladimir K Michaelis; Ta-Chung Ong; Matthew K Kiesewetter; Derik K Frantz; Joseph J Walish; Enrico Ravera; Claudio Luchinat; Timothy M Swager; Robert G Griffin
Journal:  Isr J Chem       Date:  2014-02-13       Impact factor: 3.333

2.  Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning.

Authors:  Kent Thurber; Robert Tycko
Journal:  J Magn Reson       Date:  2016-03       Impact factor: 2.229

3.  Verdazyl-ribose: A new radical for solid-state dynamic nuclear polarization at high magnetic field.

Authors:  Kent R Thurber; Thanh-Ngoc Le; Victor Changcoco; David J R Brook
Journal:  J Magn Reson       Date:  2018-03-01       Impact factor: 2.229

4.  Dynamic nuclear polarization of 17O: direct polarization.

Authors:  Vladimir K Michaelis; Björn Corzilius; Albert A Smith; Robert G Griffin
Journal:  J Phys Chem B       Date:  2013-11-22       Impact factor: 2.991

5.  Cellular solid-state NMR investigation of a membrane protein using dynamic nuclear polarization.

Authors:  Kazutoshi Yamamoto; Marc A Caporini; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta       Date:  2014-07-11

Review 6.  Advances in studying protein disorder with solid-state NMR.

Authors:  Ansgar B Siemer
Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

7.  Design and characterization of a W-band system for modulated DNP experiments.

Authors:  Mallory L Guy; Lihuang Zhu; Chandrasekhar Ramanathan
Journal:  J Magn Reson       Date:  2015-10-14       Impact factor: 2.229

8.  Succinyl-DOTOPA: An effective triradical dopant for low-temperature dynamic nuclear polarization with high solubility in aqueous solvent mixtures at neutral pH.

Authors:  Wai-Ming Yau; Jaekyun Jeon; Robert Tycko
Journal:  J Magn Reson       Date:  2019-12-20       Impact factor: 2.229

9.  Shortening spin-lattice relaxation using a copper-chelated lipid at low-temperatures - A magic angle spinning solid-state NMR study on a membrane-bound protein.

Authors:  Kazutoshi Yamamoto; Marc A Caporini; Sangchoul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2013-11-01       Impact factor: 2.229

10.  Application of DNP-enhanced solid-state NMR to studies of amyloid-β peptide interaction with lipid membranes.

Authors:  Thomas Deo; Qinghui Cheng; Subhadip Paul; Wei Qiang; Alexey Potapov
Journal:  Chem Phys Lipids       Date:  2021-03-11       Impact factor: 3.329

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