Literature DB >> 23546618

Overview of electron crystallography of membrane proteins: crystallization and screening strategies using negative stain electron microscopy.

Brent L Nannenga1, Matthew G Iadanza, Breanna S Vollmar, Tamir Gonen.   

Abstract

Electron cryomicroscopy, or cryoEM, is an emerging technique for studying the three-dimensional structures of proteins and large macromolecular machines. Electron crystallography is a branch of cryoEM in which structures of proteins can be studied at resolutions that rival those achieved by X-ray crystallography. Electron crystallography employs two-dimensional crystals of a membrane protein embedded within a lipid bilayer. The key to a successful electron crystallographic experiment is the crystallization, or reconstitution, of the protein of interest. This unit describes ways in which protein can be expressed, purified, and reconstituted into well-ordered two-dimensional crystals. A protocol is also provided for negative stain electron microscopy as a tool for screening crystallization trials. When large and well-ordered crystals are obtained, the structures of both protein and its surrounding membrane can be determined to atomic resolution.

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Year:  2013        PMID: 23546618      PMCID: PMC3850493          DOI: 10.1002/0471140864.ps1715s72

Source DB:  PubMed          Journal:  Curr Protoc Protein Sci        ISSN: 1934-3655


  29 in total

1.  Cryo-electron crystallography of two sub-complexes of bovine complex I reveals the relationship between the membrane and peripheral arms.

Authors:  L A Sazanov; J E Walker
Journal:  J Mol Biol       Date:  2000-09-15       Impact factor: 5.469

2.  Reprogramming chaperone pathways to improve membrane protein expression in Escherichia coli.

Authors:  Brent L Nannenga; François Baneyx
Journal:  Protein Sci       Date:  2011-07-07       Impact factor: 6.725

Review 3.  Interaction of membrane proteins and lipids with solubilizing detergents.

Authors:  M le Maire; P Champeil; J V Moller
Journal:  Biochim Biophys Acta       Date:  2000-11-23

4.  Comparative analysis and "expression space" coverage of the production of prokaryotic membrane proteins for structural genomics.

Authors:  Sachin Surade; Markus Klein; Peggy C Stolt-Bergner; Cornelia Muenke; Ankita Roy; Hartmut Michel
Journal:  Protein Sci       Date:  2006-09       Impact factor: 6.725

5.  Integrity of N- and C-termini is important for E. coli Hsp31 chaperone activity.

Authors:  M S R Sastry; Weibin Zhou; François Baneyx
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

6.  Structure and orientation of cytochrome c oxidase in crystalline membranes. Studies by electron microscopy and by labeling with subunit-specific antibodies.

Authors:  T G Frey; S H Chan; G Schatz
Journal:  J Biol Chem       Date:  1978-06-25       Impact factor: 5.157

Review 7.  Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels.

Authors:  B Miroux; J E Walker
Journal:  J Mol Biol       Date:  1996-07-19       Impact factor: 5.469

8.  Projection map of aquaporin-9 at 7 A resolution.

Authors:  Hector Viadiu; Tamir Gonen; Thomas Walz
Journal:  J Mol Biol       Date:  2006-12-20       Impact factor: 5.469

Review 9.  Advances in structural and functional analysis of membrane proteins by electron crystallography.

Authors:  Goragot Wisedchaisri; Steve L Reichow; Tamir Gonen
Journal:  Structure       Date:  2011-10-12       Impact factor: 5.006

10.  Galectin-3 is associated with the plasma membrane of lens fiber cells.

Authors:  T Gonen; P Donaldson; J Kistler
Journal:  Invest Ophthalmol Vis Sci       Date:  2000-01       Impact factor: 4.799

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  13 in total

1.  Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression.

Authors:  Jacob B Bale; Rachel U Park; Yuxi Liu; Shane Gonen; Tamir Gonen; Duilio Cascio; Neil P King; Todd O Yeates; David Baker
Journal:  Protein Sci       Date:  2015-08-06       Impact factor: 6.725

2.  Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering.

Authors:  Kevin A Cannon; Rachel U Park; Scott E Boyken; Una Nattermann; Sue Yi; David Baker; Neil P King; Todd O Yeates
Journal:  Protein Sci       Date:  2019-12-26       Impact factor: 6.725

3.  Evolution of a designed protein assembly encapsulating its own RNA genome.

Authors:  Gabriel L Butterfield; Marc J Lajoie; Heather H Gustafson; Drew L Sellers; Una Nattermann; Daniel Ellis; Jacob B Bale; Sharon Ke; Garreck H Lenz; Angelica Yehdego; Rashmi Ravichandran; Suzie H Pun; Neil P King; David Baker
Journal:  Nature       Date:  2017-12-13       Impact factor: 49.962

Review 4.  The cryo-EM method microcrystal electron diffraction (MicroED).

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Nat Methods       Date:  2019-04-29       Impact factor: 28.547

Review 5.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

6.  From electron crystallography of 2D crystals to MicroED of 3D crystals.

Authors:  Michael W Martynowycz; Tamir Gonen
Journal:  Curr Opin Colloid Interface Sci       Date:  2018-01-31       Impact factor: 6.448

Review 7.  Protein structure determination by MicroED.

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Curr Opin Struct Biol       Date:  2014-04-05       Impact factor: 6.809

Review 8.  MicroED opens a new era for biological structure determination.

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Curr Opin Struct Biol       Date:  2016-10-01       Impact factor: 6.809

9.  The collection of MicroED data for macromolecular crystallography.

Authors:  Dan Shi; Brent L Nannenga; M Jason de la Cruz; Jinyang Liu; Steven Sawtelle; Guillermo Calero; Francis E Reyes; Johan Hattne; Tamir Gonen
Journal:  Nat Protoc       Date:  2016-04-14       Impact factor: 13.491

10.  Accurate design of megadalton-scale two-component icosahedral protein complexes.

Authors:  Jacob B Bale; Shane Gonen; Yuxi Liu; William Sheffler; Daniel Ellis; Chantz Thomas; Duilio Cascio; Todd O Yeates; Tamir Gonen; Neil P King; David Baker
Journal:  Science       Date:  2016-07-22       Impact factor: 47.728

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