Literature DB >> 23476438

4-Meth-oxy-benzamidinium bromide.

Simona Irrera1, Gustavo Portalone.   

Abstract

The title salt, C8H11N2O(+)·Br(-), was synthesized by the reaction between 4-meth-oxy-benzamidine (4-amidino-anisole) and hydro-bromic acid. In the cation, the amidinium group has two similar C-N bonds [1.304 (2) and 1.316 (2) Å], and its plane forms a dihedral angle of 31.08 (5)° with the benzene ring. The ions are associated in the crystal into a three-dimension hydrogen-bonded supra-molecular network featuring N-H(+)⋯Br(-) inter-actions.

Entities:  

Year:  2012        PMID: 23476438      PMCID: PMC3588269          DOI: 10.1107/S1600536812049872

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological relevance of benzamidine, see: Powers & Harper (1999 ▶). For structural analysis of proton-transfer adducts containing mol­ecules of biological inter­est, see: Portalone (2011 ▶); Portalone & Irrera (2011 ▶). For the supra­molecular association in proton-transfer adducts containing benzamidinium cations, see: Portalone (2010 ▶, 2012 ▶); Irrera et al. (2012 ▶); Irrera & Portalone (2012a ▶,b ▶,c ▶,d ▶,e ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H11N2O+·Br M = 231.10 Orthorhombic, a = 7.5657 (6) Å b = 10.8711 (7) Å c = 11.5419 (7) Å V = 949.29 (11) Å3 Z = 4 Mo Kα radiation μ = 4.29 mm−1 T = 298 K 0.18 × 0.12 × 0.10 mm

Data collection

Agilent Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.513, T max = 0.674 34724 measured reflections 3278 independent reflections 2903 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.055 S = 1.09 3278 reflections 126 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.31 e Å−3 Absolute structure: Flack (1983 ▶), 1387 Friedel pairs Flack parameter: −0.002 (9) Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: WinGX (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812049872/rz5032sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812049872/rz5032Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H11N2O+·BrF(000) = 464
Mr = 231.10Dx = 1.617 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ac 2abCell parameters from 10829 reflections
a = 7.5657 (6) Åθ = 3.2–32.5°
b = 10.8711 (7) ŵ = 4.29 mm1
c = 11.5419 (7) ÅT = 298 K
V = 949.29 (11) Å3Tablets, colourless
Z = 40.18 × 0.12 × 0.10 mm
Agilent Xcalibur Sapphire3 diffractometer3278 independent reflections
Radiation source: Enhance (Mo) X-ray Source2903 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
Detector resolution: 16.0696 pixels mm-1θmax = 32.0°, θmin = 3.2°
ω and φ scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −16→16
Tmin = 0.513, Tmax = 0.674l = −17→17
34724 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.055w = 1/[σ2(Fo2) + (0.0236P)2 + 0.1235P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
3278 reflectionsΔρmax = 0.22 e Å3
126 parametersΔρmin = −0.31 e Å3
0 restraintsAbsolute structure: Flack (1983), 1387 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.002 (9)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.35106 (3)0.611694 (17)−0.195955 (16)0.04325 (6)
O10.3480 (2)−0.16213 (12)0.17351 (11)0.0435 (3)
N10.4313 (3)0.31784 (17)−0.13950 (15)0.0431 (4)
H1A0.431 (3)0.392 (3)−0.169 (2)0.056 (7)*
H1B0.484 (3)0.261 (3)−0.181 (2)0.062 (8)*
N20.3375 (3)0.40022 (16)0.02982 (15)0.0440 (4)
H2A0.329 (3)0.480 (2)−0.003 (2)0.060 (7)*
H2B0.300 (3)0.394 (3)0.092 (2)0.054 (7)*
C10.3765 (2)0.18004 (16)0.01954 (14)0.0312 (3)
C20.3378 (3)0.07914 (17)−0.04827 (15)0.0387 (4)
H20.31770.0898−0.12710.046*
C30.3284 (3)−0.03770 (17)−0.00107 (16)0.0407 (4)
H30.3034−0.1052−0.04770.049*
C40.3568 (3)−0.05267 (15)0.11722 (15)0.0347 (3)
C50.3987 (2)0.04789 (17)0.18527 (16)0.0383 (4)
H50.42100.03700.26380.046*
C60.4076 (2)0.16333 (18)0.13810 (16)0.0364 (4)
H60.43440.23060.18480.044*
C70.3823 (2)0.30343 (17)−0.03201 (15)0.0319 (4)
C80.3064 (3)−0.26858 (18)0.1078 (2)0.0521 (6)
H8A0.1936−0.25780.07110.078*
H8B0.3021−0.33880.15810.078*
H8C0.3955−0.28110.04980.078*
U11U22U33U12U13U23
Br10.05673 (11)0.03755 (9)0.03548 (8)−0.00280 (10)−0.00105 (9)0.01017 (8)
O10.0614 (8)0.0328 (6)0.0364 (7)0.0010 (7)−0.0039 (7)0.0042 (5)
N10.0643 (11)0.0313 (8)0.0338 (8)0.0052 (8)0.0086 (8)0.0021 (7)
N20.0634 (10)0.0317 (8)0.0368 (8)0.0032 (10)0.0107 (8)−0.0013 (7)
C10.0340 (9)0.0304 (8)0.0291 (7)0.0011 (7)0.0007 (7)0.0000 (6)
C20.0536 (11)0.0369 (9)0.0255 (7)−0.0042 (9)−0.0032 (8)−0.0002 (6)
C30.0581 (13)0.0329 (8)0.0311 (8)−0.0050 (9)−0.0029 (9)−0.0035 (7)
C40.0385 (8)0.0324 (8)0.0332 (8)0.0036 (9)0.0004 (9)0.0038 (6)
C50.0489 (10)0.0387 (9)0.0272 (8)0.0020 (7)−0.0061 (8)0.0017 (7)
C60.0459 (10)0.0335 (9)0.0298 (8)0.0018 (8)−0.0040 (7)−0.0055 (7)
C70.0331 (9)0.0312 (8)0.0313 (8)−0.0008 (7)−0.0005 (7)−0.0012 (6)
C80.0759 (17)0.0332 (10)0.0474 (11)0.0008 (10)0.0045 (11)0.0001 (8)
O1—C41.357 (2)C2—C31.384 (3)
O1—C81.419 (2)C2—H20.9300
N1—C71.304 (2)C3—C41.392 (2)
N1—H1A0.87 (3)C3—H30.9300
N1—H1B0.88 (3)C4—C51.383 (3)
N2—C71.316 (2)C5—C61.370 (3)
N2—H2A0.95 (3)C5—H50.9300
N2—H2B0.78 (2)C6—H60.9300
C1—C21.379 (2)C8—H8A0.9600
C1—C61.400 (2)C8—H8B0.9600
C1—C71.468 (2)C8—H8C0.9600
C4—O1—C8118.05 (14)O1—C4—C3124.37 (16)
C7—N1—H1A118.6 (16)C5—C4—C3120.01 (16)
C7—N1—H1B124.6 (17)C6—C5—C4120.66 (16)
H1A—N1—H1B116 (2)C6—C5—H5119.7
C7—N2—H2A122.2 (16)C4—C5—H5119.7
C7—N2—H2B122 (2)C5—C6—C1119.93 (17)
H2A—N2—H2B115 (3)C5—C6—H6120.0
C2—C1—C6119.15 (17)C1—C6—H6120.0
C2—C1—C7120.22 (15)N1—C7—N2119.54 (18)
C6—C1—C7120.62 (16)N1—C7—C1120.25 (16)
C1—C2—C3121.18 (16)N2—C7—C1120.21 (16)
C1—C2—H2119.4O1—C8—H8A109.5
C3—C2—H2119.4O1—C8—H8B109.5
C2—C3—C4119.05 (16)H8A—C8—H8B109.5
C2—C3—H3120.5O1—C8—H8C109.5
C4—C3—H3120.5H8A—C8—H8C109.5
O1—C4—C5115.62 (15)H8B—C8—H8C109.5
C6—C1—C2—C30.4 (3)C3—C4—C5—C61.9 (3)
C7—C1—C2—C3−178.8 (2)C4—C5—C6—C1−0.8 (3)
C1—C2—C3—C40.7 (3)C2—C1—C6—C5−0.3 (3)
C8—O1—C4—C5−179.67 (18)C7—C1—C6—C5178.87 (17)
C8—O1—C4—C3−0.2 (3)C2—C1—C7—N1−31.3 (3)
C2—C3—C4—O1178.8 (2)C6—C1—C7—N1149.52 (19)
C2—C3—C4—C5−1.8 (3)C2—C1—C7—N2148.4 (2)
O1—C4—C5—C6−178.63 (18)C6—C1—C7—N2−30.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Br10.87 (3)2.48 (3)3.3163 (19)159 (2)
N1—H1B···Br1i0.88 (3)2.49 (3)3.3676 (19)176 (2)
N2—H2A···Br10.95 (3)2.65 (3)3.4765 (17)145 (2)
N2—H2B···Br1ii0.78 (2)2.70 (3)3.4742 (17)175 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯Br10.87 (3)2.48 (3)3.3163 (19)159 (2)
N1—H1B⋯Br1i 0.88 (3)2.49 (3)3.3676 (19)176 (2)
N2—H2A⋯Br10.95 (3)2.65 (3)3.4765 (17)145 (2)
N2—H2B⋯Br1ii 0.78 (2)2.70 (3)3.4742 (17)175 (2)

Symmetry codes: (i) ; (ii) .

  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. I. Four molecular salts with uracil derivatives.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2010-05-13       Impact factor: 1.172

3.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. II. Concomitant polymorphs of the molecular salt of 2,6-dimethoxybenzoic acid with benzamidine.

Authors:  Simona Irrera; Giancarlo Ortaggi; Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2012-10-18       Impact factor: 1.172

4.  Solid-phase molecular recognition of cytosine based on proton-transfer reaction. Part II. supramolecular architecture in the cocrystals of cytosine and its 5-Fluoroderivative with 5-Nitrouracil.

Authors:  Gustavo Portalone
Journal:  Chem Cent J       Date:  2011-09-02       Impact factor: 4.215

5.  4-Meth-oxy-benzamidinium 2,6-dimeth-oxy-benzoate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

6.  4-Meth-oxy-benzamidinium acetate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03

7.  4-Meth-oxy-benzamidinium nitrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-10

8.  4-Meth-oxy-benzamidinium hydrogen oxalate monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-14

9.  4-Meth-oxy-benzamidinium hydrogen sulfate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-31

10.  4-Meth-oxy-benzamidinium chloride monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06
  10 in total
  1 in total

1.  Benzamidinium 2-meth-oxy-benzoate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-19
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.