Literature DB >> 23423890

In vitro evolution of enzymes.

Misha V Golynskiy1, John C Haugner, Aleardo Morelli, Dana Morrone, Burckhard Seelig.   

Abstract

In the past decade, in vitro evolution techniques have been used to improve the performance or alter the activity of a number of different enzymes and have generated enzymes de novo. In this review, we provide an overview of the available in vitro methods, their application, and some general considerations for enzyme engineering in vitro. We discuss the advantages of in vitro over in vivo approaches and focus on ribosome display, mRNA display, DNA display technologies, and in vitro compartmentalization (IVC) methods. This review aims to help researchers determine which approach is best suited for their own experimental needs and to highlight that in vitro methods offer a promising route for enzyme engineering.

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Year:  2013        PMID: 23423890      PMCID: PMC6924924          DOI: 10.1007/978-1-62703-293-3_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  68 in total

1.  Directed evolution of polymerase function by compartmentalized self-replication.

Authors:  F J Ghadessy; J L Ong; P Holliger
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

2.  Activity-based in vitro selection of T4 DNA ligase.

Authors:  Fumio Takahashi; Hisakage Funabashi; Masayasu Mie; Yaeta Endo; Tatsuya Sawasaki; Masuo Aizawa; Eiry Kobatake
Journal:  Biochem Biophys Res Commun       Date:  2005-10-28       Impact factor: 3.575

Review 3.  New genotype-phenotype linkages for directed evolution of functional proteins.

Authors:  Hans Leemhuis; Viktor Stein; Andrew D Griffiths; Florian Hollfelder
Journal:  Curr Opin Struct Biol       Date:  2005-08       Impact factor: 6.809

4.  Selection of single domain binding proteins by covalent DNA display.

Authors:  Julian Bertschinger; Dragan Grabulovski; Dario Neri
Journal:  Protein Eng Des Sel       Date:  2007-01-22       Impact factor: 1.650

5.  A covalent chemical genotype-phenotype linkage for in vitro protein evolution.

Authors:  Viktor Stein; India Sielaff; Kai Johnsson; Florian Hollfelder
Journal:  Chembiochem       Date:  2007-12-17       Impact factor: 3.164

6.  RNA-peptide fusions for the in vitro selection of peptides and proteins.

Authors:  R W Roberts; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

7.  Trinucleotide phosphoramidites: ideal reagents for the synthesis of mixed oligonucleotides for random mutagenesis.

Authors:  B Virnekäs; L Ge; A Plückthun; K C Schneider; G Wellnhofer; S E Moroney
Journal:  Nucleic Acids Res       Date:  1994-12-25       Impact factor: 16.971

Review 8.  Directed evolution of nucleic acid enzymes.

Authors:  Gerald F Joyce
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

9.  Millisecond kinetics on a microfluidic chip using nanoliters of reagents.

Authors:  Helen Song; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

10.  Selection and evolution of enzymes from a partially randomized non-catalytic scaffold.

Authors:  Burckhard Seelig; Jack W Szostak
Journal:  Nature       Date:  2007-08-16       Impact factor: 49.962

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  7 in total

1.  Extensive libraries of gene truncation variants generated by in vitro transposition.

Authors:  Aleardo Morelli; Yari Cabezas; Lauren J Mills; Burckhard Seelig
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

2.  Highly diverse protein library based on the ubiquitous (β/α)₈ enzyme fold yields well-structured proteins through in vitro folding selection.

Authors:  Misha V Golynskiy; John C Haugner; Burckhard Seelig
Journal:  Chembiochem       Date:  2013-08-16       Impact factor: 3.164

3.  Overview of cell-free protein synthesis: historic landmarks, commercial systems, and expanding applications.

Authors:  Shaorong Chong
Journal:  Curr Protoc Mol Biol       Date:  2014-10-01

Review 4.  Peptide aptamers: development and applications.

Authors:  Sergey Reverdatto; David S Burz; Alexander Shekhtman
Journal:  Curr Top Med Chem       Date:  2015       Impact factor: 3.295

5.  Universal labeling of 5'-triphosphate RNAs by artificial RNA ligase enzyme with broad substrate specificity.

Authors:  John C Haugner; Burckhard Seelig
Journal:  Chem Commun (Camb)       Date:  2013-08-25       Impact factor: 6.222

6.  Thermostable artificial enzyme isolated by in vitro selection.

Authors:  Aleardo Morelli; John Haugner; Burckhard Seelig
Journal:  PLoS One       Date:  2014-11-13       Impact factor: 3.240

Review 7.  Lymphocytes in Cellular Therapy: Functional Regulation of CAR T Cells.

Authors:  Alka Dwivedi; Atharva Karulkar; Sarbari Ghosh; Afrin Rafiq; Rahul Purwar
Journal:  Front Immunol       Date:  2019-01-18       Impact factor: 7.561

  7 in total

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