| Literature DB >> 23351549 |
Gail E Henderson1, R Jean Cadigan1, Teresa P Edwards2, Ian Conlon3, Anders G Nelson1, James P Evans4, Arlene M Davis1, Catherine Zimmer5, Bryan J Weiner6.
Abstract
BACKGROUND: Effective translational biomedical research hinges on the operation of 'biobanks,' repositories that assemble, store, and manage collections of human specimens and related data. Some are established intentionally to address particular research needs; many, however, have arisen opportunistically, in a variety of settings and with a variety of expectations regarding their functions and longevity. Despite their rising prominence, little is known about how biobanks are organized and function beyond simple classification systems (government, academia, industry).Entities:
Keywords: Biobank; biorepository; governance; survey
Year: 2013 PMID: 23351549 PMCID: PMC3706795 DOI: 10.1186/gm407
Source DB: PubMed Journal: Genome Med ISSN: 1756-994X Impact factor: 11.117
Figure 1Number of biobank names initially identified, and process of determining eligibility for survey recruitment.
Comparison of responding biobanks to master list
| Responding biobanks | Master list | |||
|---|---|---|---|---|
| n | % | n | % | |
| Yes | 413 | 91 | 507 | 80 |
| No | 43 | 9 | 130 | 20 |
| Total | 456 | 100 | 637 | 100 |
| .com | 26 | 6 | 40 | 6 |
| .edu | 296 | 65 | 399 | 63 |
| .gov | 26 | 6 | 32 | 5 |
| .org or.net | 108 | 24 | 165 | 26 |
| Total | 456 | 100 | 637 | 100 |
Year of establishment
| n | % | |
|---|---|---|
| 1980 or earlier | 30 | 7 |
| 1981 to 1990 | 46 | 10 |
| 1991 to 2000 | 109 | 24 |
| 2001 to 2010 | 249 | 56 |
| 2011 or later | 13 | 3 |
| Total | 447 | 100 |
Primary reason for establishment by date
| Year established | Facilitate research on a particular disease or type of disease | Facilitate research generally | Other reason | Total | ||||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | n | % | n | % | |
| Before 2003 | 137 | 59 | 50 | 22 | 45 | 19 | 232 | 54 |
| 2003 or later | 87 | 45 | 73 | 38 | 34 | 18 | 194 | 46 |
| Total | 224 | 53 | 123 | 29 | 79 | 19 | 426 | 100 |
Χ2 = 13.71, P < 0.01
Number of specimens in storage
| n | % | |
|---|---|---|
| Less than 500 | 63 | 15 |
| 500 to 999 | 28 | 7 |
| 1000 to 1999 | 31 | 7 |
| 2000 to 4999 | 54 | 13 |
| 5000 to 9999 | 44 | 10 |
| 10,000 to 49,999 | 70 | 16 |
| 50,000 to 99,999 | 38 | 9 |
| 100,000 to 499,999 | 65 | 15 |
| 500,000 + | 33 | 8 |
| Total | 426 | 100 |
Mean: 461,396; standard deviation: 3,324,096; median: 8000; interquartile range: 1,200 to 76,000; skewness: 12.76; kurtosis: 181.
Types of specimens in storage (check all that apply)
| Percentage of biobanks storing specimens of this type | n | % |
|---|---|---|
| Serum or plasma | 349 | 77 |
| Solid tissue specimens, including paraffin-embedded, frozen, or other | 315 | 69 |
| Whole blood | 251 | 55 |
| Peripheral blood cells or bone marrow | 222 | 49 |
| Cell lines | 162 | 36 |
| Saliva or buccal cells | 155 | 34 |
| Urine or stool | 138 | 30 |
| Cerebral spinal fluid | 85 | 19 |
| Cord blood or cord blood derivatives | 51 | 11 |
| Other biological specimens | 40 | 9 |
| Pathological body fluids | 30 | 7 |
| Hair/toenails | 14 | 3 |
Number of types of specimens in storage
| n | % | |
|---|---|---|
| 1 | 58 | 13 |
| 2 | 59 | 13 |
| 3 | 81 | 18 |
| 4 | 62 | 14 |
| 5 | 66 | 15 |
| 6 | 50 | 11 |
| 7 | 38 | 8 |
| 8+ | 36 | 8 |
| Total | 453 | 100 |
Acquisition of specimens (check all that apply)
| n | % | |
|---|---|---|
| Direct from individuals donating them | 343 | 75 |
| Residual specimens acquired from clinical care in hospitals, clinical laboratories, or pathology departments | 261 | 57 |
| Research | 60 | 13 |
| Residual specimens from public health departments or programs | 19 | 4 |
| Vendors | 8 | 2 |
| Organ/body donation organization | 7 | 2 |
| Other repositories | 7 | 2 |
| Other | 6 | 1 |
| Orphaned collections | 4 | 1 |
Specimen contributors (check all that apply)
| n | % | |
|---|---|---|
| Individuals with a particular disease or type of disease | 335 | 76 |
| Patients from specific hospital(s) or clinic(s) | 331 | 76 |
| Participants in a cohort study | 184 | 40 |
| Participants in clinical trials | 180 | 39 |
| Individuals from a specific geographic area (including community-based biobank) | 122 | 27 |
Type of larger organizations biobank is part of (check all that apply)
| n | % | |
|---|---|---|
| Academic institution | 307 | 78 |
| Hospital or health care organization | 105 | 27 |
| Research institute | 60 | 15 |
| Federal government | 38 | 10 |
| Disease or health advocacy organization | 19 | 5 |
| State government | 17 | 4 |
| Philanthropic organization | 11 | 3 |
| Corporation | 10 | 3 |
| Other | 7 | 2 |
| Consortium | 5 | 1 |
Note: Table includes only biobanks which are embedded in at least one larger organization (n = 394)
Number of types of organizations biobank is part of, by academic affiliation
| With academic affiliation | Without academic affiliation | |||
|---|---|---|---|---|
| n | % | n | % | |
| 0 (independent) | 0 | 0 | 54 | 38 |
| 1 | 189 | 62 | 77 | 55 |
| 2 | 71 | 23 | 10 | 7 |
| 3 | 38 | 12 | 0 | 0 |
| 4 | 5 | 2 | 0 | 0 |
| 5 | 3 | 1 | 0 | 0 |
| 6 | 1 | 0 | 0 | 0 |
| Total | 307 | 100 | 141 | 100 |
Largest current source of funding
| n | % | |
|---|---|---|
| Federal government | 158 | 36 |
| The larger organization biobank is a part of | 133 | 30 |
| Fees for services | 49 | 11 |
| Individuals or foundations | 43 | 10 |
| State government | 11 | 2 |
| Clinical and Translational Science Award | 11 | 2 |
| Sale of specimens | 10 | 2 |
| Other | 10 | 2 |
| Sale of other products | 9 | 2 |
| The network to which biobank belongs | 5 | 1 |
| None | 4 | 1 |
| Total | 443 | 100 |
Funding sources in past 5 years (check all that apply)
| n | % | |
|---|---|---|
| The larger organization biobank is part of | 269 | 59 |
| Federal government | 260 | 57 |
| Fees for services | 200 | 44 |
| Individuals or foundations | 182 | 40 |
| Sale of specimens | 68 | 15 |
| State government | 53 | 12 |
| Clinical and Translational Science Award | 47 | 10 |
| The network to which biobank belongs | 33 | 7 |
| Sale of other products | 30 | 7 |
| Interest or dividends | 15 | 3 |
| Licensing technologies | 14 | 3 |
| Local government | 5 | 1 |