Literature DB >> 23340732

An R(1ρ) expression for a spin in chemical exchange between two sites with unequal transverse relaxation rates.

Andrew J Baldwin1, Lewis E Kay.   

Abstract

An analytical expression is derived for the rotating frame relaxation rate, R(1ρ), of a spin exchanging between two sites with different transverse relaxation times. A number of limiting cases are examined, with the equation reducing to formulae derived previously under the assumption of equivalent relaxation rates at each site. The measurement of a pair off-resonance R(1ρ) values, with the carrier displaced equally on either side of the observed correlation, forms the basis of one of the approaches for obtaining signs of chemical shift differences, Δω, of exchanging nuclei. The results presented here establish that this method is relatively insensitive to differential transverse relaxation rates between the exchaning states, greatly simplifying the calculation of optimal parameters in R(1ρ) based experiments that are used for measurement of signs of Δω.

Mesh:

Year:  2013        PMID: 23340732     DOI: 10.1007/s10858-012-9694-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  35 in total

1.  Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution.

Authors:  R Ishima; D A Torchia
Journal:  J Biomol NMR       Date:  1999-08       Impact factor: 2.835

2.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

3.  Off-resonance R1rho relaxation outside of the fast exchange limit: an experimental study of a cavity mutant of T4 lysozyme.

Authors:  Dmitry M Korzhnev; Vladislav Yu Orekhov; Frederick W Dahlquist; Lewis E Kay
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

4.  Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR.

Authors:  Dmitry M Korzhnev; Xavier Salvatella; Michele Vendruscolo; Ariel A Di Nardo; Alan R Davidson; Christopher M Dobson; Lewis E Kay
Journal:  Nature       Date:  2004-07-29       Impact factor: 49.962

5.  Simultaneous determination of protein structure and dynamics.

Authors:  Kresten Lindorff-Larsen; Robert B Best; Mark A Depristo; Christopher M Dobson; Michele Vendruscolo
Journal:  Nature       Date:  2005-01-13       Impact factor: 49.962

6.  Accuracy of optimized chemical-exchange parameters derived by fitting CPMG R2 dispersion profiles when R2(0a) not = R2(0b).

Authors:  Rieko Ishima; Dennis A Torchia
Journal:  J Biomol NMR       Date:  2006-04       Impact factor: 2.835

7.  Measurement of signs of chemical shift differences between ground and excited protein states: a comparison between H(S/M)QC and R1rho methods.

Authors:  Renate Auer; D Flemming Hansen; Philipp Neudecker; Dmitry M Korzhnev; D Ranjith Muhandiram; Robert Konrat; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-12-22       Impact factor: 2.835

8.  αB-crystallin polydispersity is a consequence of unbiased quaternary dynamics.

Authors:  Andrew J Baldwin; Hadi Lioe; Carol V Robinson; Lewis E Kay; Justin L P Benesch
Journal:  J Mol Biol       Date:  2011-08-03       Impact factor: 5.469

9.  Quaternary dynamics of αB-crystallin as a direct consequence of localised tertiary fluctuations in the C-terminus.

Authors:  Andrew J Baldwin; Gillian R Hilton; Hadi Lioe; Claire Bagnéris; Justin L P Benesch; Lewis E Kay
Journal:  J Mol Biol       Date:  2011-08-03       Impact factor: 5.469

10.  Measurement of the signs of methyl 13C chemical shift differences between interconverting ground and excited protein states by R(1ρ): an application to αB-crystallin.

Authors:  Andrew J Baldwin; Lewis E Kay
Journal:  J Biomol NMR       Date:  2012-04-05       Impact factor: 2.835

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  15 in total

1.  Speeding-up exchange-mediated saturation transfer experiments by Fourier transform.

Authors:  Marta G Carneiro; Jithender G Reddy; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2015-09-09       Impact factor: 2.835

Review 2.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

3.  Quantifying protein dynamics in the ps-ns time regime by NMR relaxation.

Authors:  Griselda Hernández; David M LeMaster
Journal:  J Biomol NMR       Date:  2016-10-12       Impact factor: 2.835

4.  Evaluating the influence of initial magnetization conditions on extracted exchange parameters in NMR relaxation experiments: applications to CPMG and CEST.

Authors:  Tairan Yuwen; Ashok Sekhar; Lewis E Kay
Journal:  J Biomol NMR       Date:  2016-07-29       Impact factor: 2.835

Review 5.  Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R relaxation dispersion.

Authors:  Atul Rangadurai; Eric S Szymaski; Isaac J Kimsey; Honglue Shi; Hashim M Al-Hashimi
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2019-05-11       Impact factor: 9.795

6.  Concerted millisecond timescale dynamics in the intrinsically disordered carboxyl terminus of γ-tubulin induced by mutation of a conserved tyrosine residue.

Authors:  Jason Harris; Maria Shadrina; Carlos Oliver; Jackie Vogel; Anthony Mittermaier
Journal:  Protein Sci       Date:  2017-12-15       Impact factor: 6.725

7.  Exchange saturation transfer and associated NMR techniques for studies of protein interactions involving high-molecular-weight systems.

Authors:  Vitali Tugarinov; G Marius Clore
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

Review 8.  A dynamic look backward and forward.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2016-02-11       Impact factor: 2.229

9.  General expressions for R1ρ relaxation for N-site chemical exchange and the special case of linear chains.

Authors:  Hans Koss; Mark Rance; Arthur G Palmer
Journal:  J Magn Reson       Date:  2016-10-27       Impact factor: 2.229

10.  Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange.

Authors:  Jameson R Bothe; Zachary W Stein; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2014-04-20       Impact factor: 2.229

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