Literature DB >> 26899226

A dynamic look backward and forward.

Arthur G Palmer1.   

Abstract

The 2015 Gunther Laukien Prize recognized solution NMR studies of protein dynamics and thermodynamics. This Perspective surveys aspects of the development and application of NMR spin relaxation for investigations of protein flexibility and function over multiple time scales in solution. Methods highlighted include analysis of overall rotational diffusion, theoretical descriptions of R1ρ relaxation, and molecular dynamics simulations to interpret NMR spin relaxation. Applications are illustrated for the zinc-finger domain Xfin-31, the calcium-binding proteins calbindin D9k and calmodulin, and the bZip transcription factor of GCN4.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chemical exchange; Conformational dynamics; Kinetics; Ligand binding; Molecular dynamics simulation; Nuclear magnetic resonance spectroscopy; Spin relaxation

Mesh：

Substances：

Year:  2016        PMID： 26899226      PMCID： PMC4856014          DOI： 10.1016/j.jmr.2016.01.018

Source DB:  PubMed          Journal:  J Magn Reson        ISSN： 1090-7807            Impact factor:   2.229


  52 in total

1.  Site-site communication in the EF-hand Ca2+-binding protein calbindin D9k.

Authors:  L Mäler; J Blankenship; M Rance; W J Chazin
Journal:  Nat Struct Biol       Date:  2000-03

Review 2.  Dynamics and mechanisms of coupled protein folding and binding reactions.

Authors:  Thomas Kiefhaber; Annett Bachmann; Kristine Steen Jensen
Journal:  Curr Opin Struct Biol       Date:  2011-11-29       Impact factor: 6.809

3.  Temperature dependence of domain motions of calmodulin probed by NMR relaxation at multiple fields.

Authors:  Shou-Lin Chang; Attila Szabo; Nico Tjandra
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

4.  Temperature dependence of the NMR generalized order parameter.

Authors:  Eric Johnson; Arthur G Palmer; Mark Rance
Journal:  Proteins       Date:  2007-03-01

5.  Influence of the coupling of interdomain and overall motions on NMR relaxation.

Authors:  Vance Wong; David A Case; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

6.  Insights into the local residual entropy of proteins provided by NMR relaxation.

Authors:  Z Li; S Raychaudhuri; A J Wand
Journal:  Protein Sci       Date:  1996-12       Impact factor: 6.725

7.  An R(1ρ) expression for a spin in chemical exchange between two sites with unequal transverse relaxation rates.

Authors:  Andrew J Baldwin; Lewis E Kay
Journal:  J Biomol NMR       Date:  2013-01-23       Impact factor: 2.835

8.  3D accordion spectroscopy for measuring 15N and 13CO relaxation rates in poorly resolved NMR spectra.

Authors:  P A Carr; D A Fearing; A G Palmer
Journal:  J Magn Reson       Date:  1998-05       Impact factor: 2.229

9.  Disulfide bond isomerization in basic pancreatic trypsin inhibitor: multisite chemical exchange quantified by CPMG relaxation dispersion and chemical shift modeling.

Authors:  Michael J Grey; Chunyu Wang; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

10.  Dynamic properties of a type II cadherin adhesive domain: implications for the mechanism of strand-swapping of classical cadherins.

Authors:  Vesselin Z Miloushev; Fabiana Bahna; Carlo Ciatto; Goran Ahlsen; Barry Honig; Lawrence Shapiro; Arthur G Palmer
Journal:  Structure       Date:  2008-08-06       Impact factor: 5.006
View more
  10 in total

1.  Cross-correlated relaxation rates between protein backbone H-X dipolar interactions.

Authors:  Beat Vögeli
Journal:  J Biomol NMR       Date:  2017-03-12       Impact factor: 2.835

2.  General expressions for R1ρ relaxation for N-site chemical exchange and the special case of linear chains.

Authors:  Hans Koss; Mark Rance; Arthur G Palmer
Journal:  J Magn Reson       Date:  2016-10-27       Impact factor: 2.229

3.  Characterizing Watson-Crick versus Hoogsteen Base Pairing in a DNA-Protein Complex Using Nuclear Magnetic Resonance and Site-Specifically 13C- and 15N-Labeled DNA.

Authors:  Huiqing Zhou; Bharathwaj Sathyamoorthy; Allison Stelling; Yu Xu; Yi Xue; Ying Zhang Pigli; David A Case; Phoebe A Rice; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2019-04-05       Impact factor: 3.162

4.  NMR spectroscopy, excited states and relevance to problems in cell biology - transient pre-nucleation tetramerization of huntingtin and insights into Huntington's disease.

Authors:  G Marius Clore
Journal:  J Cell Sci       Date:  2022-06-15       Impact factor: 5.235

5.  Compact expressions for R1ρ relaxation for N-site chemical exchange using Schur decomposition.

Authors:  Mark Rance; Arthur G Palmer
Journal:  J Magn Reson       Date:  2020-03-14       Impact factor: 2.229

6.  m(1)A and m(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs.

Authors:  Huiqing Zhou; Isaac J Kimsey; Evgenia N Nikolova; Bharathwaj Sathyamoorthy; Gianmarc Grazioli; James McSally; Tianyu Bai; Christoph H Wunderlich; Christoph Kreutz; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  Nat Struct Mol Biol       Date:  2016-08-01       Impact factor: 15.369

7.  Reorientational Dynamics of Amyloid-β from NMR Spin Relaxation and Molecular Simulation.

Authors:  Nasrollah Rezaei-Ghaleh; Giacomo Parigi; Markus Zweckstetter
Journal:  J Phys Chem Lett       Date:  2019-06-06       Impact factor: 6.475

Review 8.  Plant Defensins from a Structural Perspective.

Authors:  Valentina Kovaleva; Irina Bukhteeva; Oleg Y Kit; Irina V Nesmelova
Journal:  Int J Mol Sci       Date:  2020-07-26       Impact factor: 5.923

Review 9.  NMR measurement of biomolecular translational and rotational motion for evaluating changes of protein oligomeric state in solution.

Authors:  Shenggen Yao; David W Keizer; Jeffrey J Babon; Frances Separovic
Journal:  Eur Biophys J       Date:  2022-04-05       Impact factor: 2.095

10.  Solution structure of recombinant Pvfp-5β reveals insights into mussel adhesion.

Authors:  Maria Agnese Morando; Francesca Venturella; Martina Sollazzo; Elisa Monaca; Raffaele Sabbatella; Valeria Vetri; Rosa Passantino; Annalisa Pastore; Caterina Alfano
Journal:  Commun Biol       Date:  2022-07-25
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.