Literature DB >> 22476760

Measurement of the signs of methyl 13C chemical shift differences between interconverting ground and excited protein states by R(1ρ): an application to αB-crystallin.

Andrew J Baldwin1, Lewis E Kay.   

Abstract

Carr-Purcell-Meiboom-Gill relaxation dispersion (CPMG RD) NMR spectroscopy has emerged as a powerful tool for quantifying the kinetics and thermodynamics of millisecond time-scale exchange processes involving the interconversion between a visible ground state and one or more minor, sparsely populated invisible 'excited' conformational states. Recently it has also become possible to determine atomic resolution structural models of excited states using a wide array of CPMG RD approaches. Analysis of CPMG RD datasets provides the magnitudes of the chemical shift differences between the ground and excited states, Δϖ, but not the sign. In order to obtain detailed structural insights from, for example, excited state chemical shifts and residual dipolar coupling measurements, these signs are required. Here we present an NMR experiment for obtaining signs of (13)C chemical shift differences of (13)CH(3) methyl groups using weak field off-resonance R(1ρ) relaxation measurements. The accuracy of the method is established by using an exchanging system where the invisible, excited state can be converted to the visible, ground state by altering sample conditions so that the signs of Δϖ values obtained from the spin-lock approach can be validated against those measured directly. Further, the spin-lock experiments are compared with the established H(S/M)QC approach for measuring signs of chemical shift differences and the relative strengths of each method are discussed. In the case of the 650 kDa human αB-crystallin complex where there are large transverse relaxation differences between ground and excited state spins the R(1ρ) method is shown to be superior to more 'traditional' experiments for sign determination.

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Year:  2012        PMID: 22476760     DOI: 10.1007/s10858-012-9617-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  50 in total

1.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

2.  Measurement of bond vector orientations in invisible excited states of proteins.

Authors:  Pramodh Vallurupalli; D Flemming Hansen; Elliott Stollar; Eva Meirovitch; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-15       Impact factor: 11.205

3.  Measurement of signs of chemical shift differences between ground and excited protein states: a comparison between H(S/M)QC and R1rho methods.

Authors:  Renate Auer; D Flemming Hansen; Philipp Neudecker; Dmitry M Korzhnev; D Ranjith Muhandiram; Robert Konrat; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-12-22       Impact factor: 2.835

4.  Measurement of methyl axis orientations in invisible, excited states of proteins by relaxation dispersion NMR spectroscopy.

Authors:  Andrew J Baldwin; D Flemming Hansen; Pramodh Vallurupalli; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2009-08-26       Impact factor: 15.419

5.  αB-crystallin polydispersity is a consequence of unbiased quaternary dynamics.

Authors:  Andrew J Baldwin; Hadi Lioe; Carol V Robinson; Lewis E Kay; Justin L P Benesch
Journal:  J Mol Biol       Date:  2011-08-03       Impact factor: 5.469

6.  Quaternary dynamics of αB-crystallin as a direct consequence of localised tertiary fluctuations in the C-terminus.

Authors:  Andrew J Baldwin; Gillian R Hilton; Hadi Lioe; Claire Bagnéris; Justin L P Benesch; Lewis E Kay
Journal:  J Mol Biol       Date:  2011-08-03       Impact factor: 5.469

7.  NMR evidence for slow collective motions in cyanometmyoglobin.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
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8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Probing chemical shifts of invisible states of proteins with relaxation dispersion NMR spectroscopy: how well can we do?

Authors:  D Flemming Hansen; Pramodh Vallurupalli; Patrik Lundström; Philipp Neudecker; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2008-02-01       Impact factor: 15.419

10.  Carbonyl carbon transverse relaxation dispersion measurements and ms-micros timescale motion in a protein hydrogen bond network.

Authors:  Rieko Ishima; James Baber; John M Louis; Dennis A Torchia
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  7 in total

1.  A 2D ¹³C-CEST experiment for studying slowly exchanging protein systems using methyl probes: an application to protein folding.

Authors:  Guillaume Bouvignies; Lewis E Kay
Journal:  J Biomol NMR       Date:  2012-06-12       Impact factor: 2.835

Review 2.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

3.  An R(1ρ) expression for a spin in chemical exchange between two sites with unequal transverse relaxation rates.

Authors:  Andrew J Baldwin; Lewis E Kay
Journal:  J Biomol NMR       Date:  2013-01-23       Impact factor: 2.835

4.  Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange.

Authors:  Jameson R Bothe; Zachary W Stein; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2014-04-20       Impact factor: 2.229

5.  An exact solution for R2,eff in CPMG experiments in the case of two site chemical exchange.

Authors:  Andrew J Baldwin
Journal:  J Magn Reson       Date:  2014-04-13       Impact factor: 2.229

6.  Proline isomerization in the C-terminal region of HSP27.

Authors:  T Reid Alderson; Justin L P Benesch; Andrew J Baldwin
Journal:  Cell Stress Chaperones       Date:  2017-05-25       Impact factor: 3.667

7.  C-terminal interactions mediate the quaternary dynamics of αB-crystallin.

Authors:  Gillian R Hilton; Georg K A Hochberg; Arthur Laganowsky; Scott I McGinnigle; Andrew J Baldwin; Justin L P Benesch
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-03-25       Impact factor: 6.237

  7 in total

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