Literature DB >> 29127738

Concerted millisecond timescale dynamics in the intrinsically disordered carboxyl terminus of γ-tubulin induced by mutation of a conserved tyrosine residue.

Jason Harris1, Maria Shadrina2, Carlos Oliver2,3, Jackie Vogel2,3, Anthony Mittermaier1.   

Abstract

Tubulins are an ancient family of eukaryotic proteins characterized by an amino-terminal globular domain and disordered carboxyl terminus. These carboxyl termini play important roles in modulating the behavior of microtubules in living cells. However, the atomic-level basis of their function is not well understood. These regions contain multiple acidic residues and their overall charges are modulated in vivo by post-translational modifications, for example, phosphorylation. In this study, we describe an application of NMR and computer Monte Carlo simulations to investigate how the modification of local charge alters the conformational sampling of the γ-tubulin carboxyl terminus. We compared the dynamics of two 39-residue polypeptides corresponding to the carboxyl-terminus of yeast γ-tubulin. One polypeptide comprised the wild-type amino acid sequence while the second contained a Y > D mutation at Y11 in the polypeptide (Y445 in the full protein). This mutation introduces additional negative charge at a site that is phosphorylated in vivo and produces a phenotype with perturbed microtubule function. NMR relaxation measurements show that the Y11D mutation produces dramatic changes in the millisecond-timescale motions of the entire polypeptide. This observation is supported by Monte Carlo simulations that-similar to NMR-predict the WT γ-CT is largely unstructured and that the substitution of Tyr 11 with Asp causes the sampling of extended conformations that are unique to the Y11D polypeptide.
© 2017 The Protein Society.

Entities:  

Keywords:  Monte Carlo simulations; NMR relaxation; disorder-to-disorder transition; intrinsically disordered proteins; polypeptide conformational ensembles; γ-tubulin

Mesh:

Substances:

Year:  2017        PMID: 29127738      PMCID: PMC5775176          DOI: 10.1002/pro.3345

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  46 in total

1.  Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Authors:  Bruce A Johnson
Journal:  Methods Mol Biol       Date:  2004

2.  Molecular dynamics modeling of tubulin C-terminal tail interactions with the microtubule surface.

Authors:  Holly Freedman; Tyler Luchko; Richard F Luduena; Jack A Tuszynski
Journal:  Proteins       Date:  2011-08-26

3.  On the origin of the cooperativity of protein folding: implications from model simulations.

Authors:  A Kolinski; W Galazka; J Skolnick
Journal:  Proteins       Date:  1996-11

4.  Folding of an intrinsically disordered protein by phosphorylation as a regulatory switch.

Authors:  Alaji Bah; Robert M Vernon; Zeba Siddiqui; Mickaël Krzeminski; Ranjith Muhandiram; Charlie Zhao; Nahum Sonenberg; Lewis E Kay; Julie D Forman-Kay
Journal:  Nature       Date:  2014-12-22       Impact factor: 49.962

5.  An R(1ρ) expression for a spin in chemical exchange between two sites with unequal transverse relaxation rates.

Authors:  Andrew J Baldwin; Lewis E Kay
Journal:  J Biomol NMR       Date:  2013-01-23       Impact factor: 2.835

6.  Impact of local and non-local interactions on thermodynamics and kinetics of protein folding.

Authors:  V I Abkevich; A M Gutin; E I Shakhnovich
Journal:  J Mol Biol       Date:  1995-09-29       Impact factor: 5.469

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 8.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

9.  The carboxy terminus of Tub4p is required for gamma-tubulin function in budding yeast.

Authors:  J Vogel; M Snyder
Journal:  J Cell Sci       Date:  2000-11       Impact factor: 5.285

10.  Ring closure activates yeast γTuRC for species-specific microtubule nucleation.

Authors:  Justin M Kollman; Charles H Greenberg; Sam Li; Michelle Moritz; Alex Zelter; Kimberly K Fong; Jose-Jesus Fernandez; Andrej Sali; John Kilmartin; Trisha N Davis; David A Agard
Journal:  Nat Struct Mol Biol       Date:  2015-01-19       Impact factor: 15.369

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  2 in total

1.  Side chain electrostatic interactions and pH-dependent expansion of the intrinsically disordered, highly acidic carboxyl-terminus of γ-tubulin.

Authors:  Brandon J Payliss; Jackie Vogel; Anthony K Mittermaier
Journal:  Protein Sci       Date:  2019-04-24       Impact factor: 6.725

2.  Regulation of Microtubule Nucleation in Mouse Bone Marrow-Derived Mast Cells by Protein Tyrosine Phosphatase SHP-1.

Authors:  Anastasiya Klebanovych; Vladimíra Sládková; Tetyana Sulimenko; Věra Vosecká; Martin Čapek; Eduarda Dráberová; Pavel Dráber; Vadym Sulimenko
Journal:  Cells       Date:  2019-04-11       Impact factor: 6.600

  2 in total

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