Literature DB >> 29492731

13C APSY-NMR for sequential assignment of intrinsically disordered proteins.

Maria Grazia Murrali1, Marco Schiavina1, Valerio Sainati1, Wolfgang Bermel2, Roberta Pierattelli3,4, Isabella C Felli5,6.   

Abstract

The increasingly recognized biological relevance of intrinsically disordered proteins requires a continuous expansion of the tools for their characterization via NMR spectroscopy, the only technique so far able to provide atomic-resolution information on these highly mobile macromolecules. Here we present the implementation of projection spectroscopy in 13C-direct detected NMR experiments to achieve the sequence specific assignment of IDPs. The approach was used to obtain the complete backbone assignment at high temperature of α-synuclein, a paradigmatic intrinsically disordered protein.

Entities:  

Keywords:  13C detection; Assignment; IDPs; Intrinsically disordered proteins; NUS

Mesh:

Substances:

Year:  2018        PMID: 29492731     DOI: 10.1007/s10858-018-0167-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  44 in total

Review 1.  Nuclear magnetic resonance methods for elucidation of structure and dynamics in disordered states.

Authors:  H J Dyson; P E Wright
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

3.  H-start for exclusively heteronuclear NMR spectroscopy: the case of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Ivano Bertini; Veronika Csizmok; Isabella C Felli; Roberta Pierattelli; Peter Tompa
Journal:  J Magn Reson       Date:  2009-03-04       Impact factor: 2.229

4.  4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Authors:  Jiří Nováček; Noam Y Haba; Jordan H Chill; Lukáš Zídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

Review 5.  Pathological unfoldomics of uncontrolled chaos: intrinsically disordered proteins and human diseases.

Authors:  Vladimir N Uversky; Vrushank Davé; Lilia M Iakoucheva; Prerna Malaney; Steven J Metallo; Ravi Ramesh Pathak; Andreas C Joerger
Journal:  Chem Rev       Date:  2014-05-15       Impact factor: 60.622

6.  A new method for purification of recombinant human alpha-synuclein in Escherichia coli.

Authors:  Chunjuan Huang; Guoping Ren; Hui Zhou; Chih-chen Wang
Journal:  Protein Expr Purif       Date:  2005-03-30       Impact factor: 1.650

Review 7.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

8.  High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Hana Sanderová; Libor Krásný
Journal:  J Biomol NMR       Date:  2012-02-17       Impact factor: 2.835

Review 9.  Intrinsically disordered proteins in human diseases: introducing the D2 concept.

Authors:  Vladimir N Uversky; Christopher J Oldfield; A Keith Dunker
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

Review 10.  Methods of probing the interactions between small molecules and disordered proteins.

Authors:  Gabriella T Heller; Francesco A Aprile; Michele Vendruscolo
Journal:  Cell Mol Life Sci       Date:  2017-06-19       Impact factor: 9.261

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  8 in total

1.  Taking Simultaneous Snapshots of Intrinsically Disordered Proteins in Action.

Authors:  Marco Schiavina; Maria Grazia Murrali; Letizia Pontoriero; Valerio Sainati; Rainer Kümmerle; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  Biophys J       Date:  2019-05-23       Impact factor: 4.033

2.  Characterizing the inhibition of α-synuclein oligomerization by a pharmacological chaperone that prevents prion formation by the protein PrP.

Authors:  Chunhua Dong; Craig R Garen; Pascal Mercier; Nils O Petersen; Michael T Woodside
Journal:  Protein Sci       Date:  2019-08-02       Impact factor: 6.725

Review 3.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

Review 4.  Transient Secondary Structures as General Target-Binding Motifs in Intrinsically Disordered Proteins.

Authors:  Do-Hyoung Kim; Kyou-Hoon Han
Journal:  Int J Mol Sci       Date:  2018-11-15       Impact factor: 5.923

Review 5.  Salient Features of Monomeric Alpha-Synuclein Revealed by NMR Spectroscopy.

Authors:  Do-Hyoung Kim; Jongchan Lee; K H Mok; Jung Ho Lee; Kyou-Hoon Han
Journal:  Biomolecules       Date:  2020-03-10

6.  Using Deep Neural Networks to Reconstruct Non-uniformly Sampled NMR Spectra.

Authors:  D Flemming Hansen
Journal:  J Biomol NMR       Date:  2019-07-10       Impact factor: 2.835

Review 7.  PreSMo Target-Binding Signatures in Intrinsically Disordered Proteins.

Authors:  Do-Hyoung Kim; Kyou-Hoon Han
Journal:  Mol Cells       Date:  2018-10-10       Impact factor: 5.034

8.  Ensemble description of the intrinsically disordered N-terminal domain of the Nipah virus P/V protein from combined NMR and SAXS.

Authors:  Marco Schiavina; Edoardo Salladini; Maria Grazia Murrali; Giancarlo Tria; Isabella C Felli; Roberta Pierattelli; Sonia Longhi
Journal:  Sci Rep       Date:  2020-11-11       Impact factor: 4.379

  8 in total

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