Literature DB >> 7664745

X-ray crystallography shows that translational initiation factor IF3 consists of two compact alpha/beta domains linked by an alpha-helix.

V Biou1, F Shu, V Ramakrishnan.   

Abstract

The structures of the two domains of translational initiation factor IF3 from Bacillus stearothermophilus have been solved by X-ray crystallography using single wavelength anomalous scattering and multiwavelength anomalous diffraction. Each of the two domains has an alpha/beta topology, with an exposed beta-sheet that is reminiscent of several ribosomal and other RNA binding proteins. An alpha-helix that protrudes out from the body of the N-terminal domain towards the C-terminal domain suggests that IF3 consists of two RNA binding domains connected by an alpha-helix and that it may bridge two regions of the ribosome. This represents the first high resolution structural information on a translational initiation factor.

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Year:  1995        PMID: 7664745      PMCID: PMC394484          DOI: 10.1002/j.1460-2075.1995.tb00077.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  39 in total

1.  Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes.

Authors:  M Grunberg-Manago; P Dessen; D Pantaloni; T Godefroy-Colburn; A D Wolfe; J Dondon
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

2.  Activity of initiation factor F3 in dissociating Escherichia coli ribosomes.

Authors:  A R Subramanian; B D Davis
Journal:  Nature       Date:  1970-12-26       Impact factor: 49.962

3.  Prokaryotic translation initiation factor IF3 is an elongated protein consisting of two crystallizable domains.

Authors:  J H Kycia; V Biou; F Shu; S E Gerchman; V Graziano; V Ramakrishnan
Journal:  Biochemistry       Date:  1995-05-09       Impact factor: 3.162

4.  Molecular cloning and sequencing of infC, the gene encoding translation initiation factor IF3, from four enterobacterial species.

Authors:  D Liveris; J J Schwartz; R Geertman; I Schwartz
Journal:  FEMS Microbiol Lett       Date:  1993-09-01       Impact factor: 2.742

5.  Translation initiation factor IF1 is essential for cell viability in Escherichia coli.

Authors:  H S Cummings; J W Hershey
Journal:  J Bacteriol       Date:  1994-01       Impact factor: 3.490

6.  Positions of proteins S6, S11 and S15 in the 30 S ribosomal subunit of Escherichia coli.

Authors:  V R Ramakrishnan; S Yabuki; I Y Sillers; D G Schindler; D M Engelman; P B Moore
Journal:  J Mol Biol       Date:  1981-12-15       Impact factor: 5.469

7.  Photochemical cross-linking of initiation factor-3 to Escherichia coli 30 S ribosomal subunits.

Authors:  L A MacKeen; L Kahan; A J Wahba; I Schwartz
Journal:  J Biol Chem       Date:  1980-11-10       Impact factor: 5.157

8.  The binding of fluorescein-labeled protein synthesis initiation factor 2 to Escherichia coli 30 S ribosomal subunits determined by fluorescence polarization.

Authors:  J Weiel; J W Hershey
Journal:  J Biol Chem       Date:  1982-02-10       Impact factor: 5.157

9.  Structure-function relationship in Escherichia coli initiation factors. Identification of a lysine residue in the ribosomal binding site of initiation factor by site-specific chemical modification with pyridoxal phosphate.

Authors:  H Ohsawa; C Gualerzi
Journal:  J Biol Chem       Date:  1981-05-25       Impact factor: 5.157

10.  Fluorescence polarization studies of the interaction of Escherichia coli protein synthesis initiation factor 3 with 30S ribosomal subunits.

Authors:  J Weiel; J W Hershey
Journal:  Biochemistry       Date:  1981-09-29       Impact factor: 3.162

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  34 in total

1.  Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

Authors:  M Pioletti; F Schlünzen; J Harms; R Zarivach; M Glühmann; H Avila; A Bashan; H Bartels; T Auerbach; C Jacobi; T Hartsch; A Yonath; F Franceschi
Journal:  EMBO J       Date:  2001-04-17       Impact factor: 11.598

2.  Location of translational initiation factor IF3 on the small ribosomal subunit.

Authors:  J P McCutcheon; R K Agrawal; S M Philips; R A Grassucci; S E Gerchman; W M Clemons; V Ramakrishnan; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

3.  Structure and dynamics of translation initiation factor aIF-1A from the archaeon Methanococcus jannaschii determined by NMR spectroscopy.

Authors:  W Li; D W Hoffman
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

4.  Altered discrimination of start codons and initiator tRNAs by mutant initiation factor 3.

Authors:  M O'Connor; S T Gregory; U L Rajbhandary; A E Dahlberg
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

5.  Translation initiation factor IF3: two domains, five functions, one mechanism?

Authors:  D Petrelli; A LaTeana; C Garofalo; R Spurio; C L Pon; C O Gualerzi
Journal:  EMBO J       Date:  2001-08-15       Impact factor: 11.598

6.  Crystal structure of a eukaryote/archaeon-like protyl-tRNA synthetase and its complex with tRNAPro(CGG).

Authors:  A Yaremchuk; S Cusack; M Tukalo
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

7.  The N-terminal domain (IF2N) of bacterial translation initiation factor IF2 is connected to the conserved C-terminal domains by a flexible linker.

Authors:  Brian Søgaard Laursen; Anne Cecillie Kjaergaard; Kim Kusk Mortensen; David W Hoffman; Hans Uffe Sperling-Petersen
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

8.  Crystal structure of a DNA binding protein from the hyperthermophilic euryarchaeon Methanococcus jannaschii.

Authors:  Ganggang Wang; Rong Guo; Mark Bartlam; Haitao Yang; Hong Xue; Yiwei Liu; Li Huang; Zihe Rao
Journal:  Protein Sci       Date:  2003-12       Impact factor: 6.725

9.  Crystal structure of the hyperthermophilic archaeal DNA-binding protein Sso10b2 at a resolution of 1.85 Angstroms.

Authors:  Chia-Cheng Chou; Ting-Wan Lin; Chin-Yu Chen; Andrew H-J Wang
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

10.  Evidence for an active role of IF3mt in the initiation of translation in mammalian mitochondria.

Authors:  Brooke E Christian; Linda L Spremulli
Journal:  Biochemistry       Date:  2009-04-21       Impact factor: 3.162

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